C2CD4D (C2 calcium dependent domain containing 4D)

Gene: C2CD4D (C2 calcium dependent domain containing 4D) Pan paniscus

Analyze

Symbol:

C2CD4D

Name:

C2 calcium dependent domain containing 4D

RGD ID:

32728722

Description:

ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); immunodeficiency 42 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C2 calcium-dependent domain-containing protein 4D

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	97,983,554 - 97,985,905 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	97,735,874 - 97,737,089 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	127,196,449 - 127,197,682 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

References

Genomics

Comparative Map Data

C2CD4D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	97,983,554 - 97,985,905 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	97,735,874 - 97,737,089 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	127,196,449 - 127,197,682 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

C2CD4D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	151,837,818 - 151,840,557 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	151,837,818 - 151,840,557 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	151,810,294 - 151,813,033 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Celera	1	124,925,032 - 124,927,726 (-)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	123,187,327 - 123,190,021 (-)	NCBI		HuRef
CHM1_1	1	153,205,664 - 153,208,358 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	150,961,316 - 150,964,055 (-)	NCBI		T2T-CHM13v2.0

C2cd4d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	94,269,720 - 94,271,874 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	94,269,745 - 94,271,873 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	94,362,444 - 94,364,567 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	94,362,438 - 94,364,566 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	94,166,366 - 94,168,489 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	94,448,662 - 94,449,971 (+)	NCBI		MGSCv36	mm8
Celera	3	95,808,801 - 95,810,925 (+)	NCBI		Celera
Cytogenetic Map	3	F2.1	NCBI
cM Map	3	40.55	NCBI

C2cd4d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	184,688,815 - 184,690,978 (+)	NCBI		GRCr8
mRatBN7.2	2	181,999,778 - 182,001,941 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	181,997,078 - 182,002,087 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	189,662,988 - 189,665,139 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	187,467,196 - 187,469,359 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	182,295,453 - 182,297,604 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	195,599,706 - 195,604,730 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	195,603,599 - 195,604,624 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	215,081,866 - 215,083,424 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	189,335,833 - 189,336,858 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	174,547,099 - 174,552,378 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

C2cd4d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955589	582,261 - 583,519 (+)	NCBI	ChiLan1.0	ChiLan1.0

C2CD4D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	17	60,288,685 - 60,291,850 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	61,866,098 - 61,867,021 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	17	60,692,885 - 60,693,803 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	60,776,794 - 60,779,975 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	61,505,943 - 61,509,090 (-)	NCBI		UU_Cfam_GSD_1.0

C2CD4D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	97,368,453 - 97,369,514 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	97,367,372 - 97,369,598 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	106,390,857 - 106,394,113 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C2CD4D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	11,846,708 - 11,847,963 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	11,846,792 - 11,847,853 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	11,405,244 - 11,407,210 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

C2cd4d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	19,507,028 - 19,508,062 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	19,506,927 - 19,508,062 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_034935559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063605271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063605273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063605276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063605278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010112425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_034935559 ⟹ XP_034791450

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	97,983,804 - 97,985,905 (+)	NCBI
NHGRI_mPanPan1	1	97,735,874 - 97,737,089 (+)	NCBI
Mhudiblu_PPA_v0	1	127,196,449 - 127,197,682 (-)	NCBI

RefSeq Acc Id:

XM_063605271 ⟹ XP_063461341

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	97,983,804 - 97,985,905 (+)	NCBI

RefSeq Acc Id:

XM_063605273 ⟹ XP_063461343

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	97,983,804 - 97,985,905 (+)	NCBI

RefSeq Acc Id:

XM_063605276 ⟹ XP_063461346

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	97,983,567 - 97,985,905 (+)	NCBI

RefSeq Acc Id:

XM_063605278 ⟹ XP_063461348

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	97,983,554 - 97,985,905 (+)	NCBI

RefSeq Acc Id:

XR_010112425

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	97,983,979 - 97,984,671 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_034791450	(Get FASTA)	NCBI Sequence Viewer
	XP_063461341	(Get FASTA)	NCBI Sequence Viewer
	XP_063461343	(Get FASTA)	NCBI Sequence Viewer
	XP_063461346	(Get FASTA)	NCBI Sequence Viewer
	XP_063461348	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_034791450 ⟸ XM_034935559

RefSeq Acc Id:

XP_063461348 ⟸ XM_063605278

RefSeq Acc Id:

XP_063461346 ⟸ XM_063605276

RefSeq Acc Id:

XP_063461343 ⟸ XM_063605273

RefSeq Acc Id:

XP_063461341 ⟸ XM_063605271

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	C2CD4D	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar