FRAT1 (FRAT regulator of WNT signaling pathway 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: FRAT1 (FRAT regulator of WNT signaling pathway 1) Pan paniscus
Analyze
Symbol: FRAT1
Name: FRAT regulator of WNT signaling pathway 1
RGD ID: 32726509
Description: ENCODES a protein that exhibits molecular function inhibitor activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); embryonic axis specification (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proto-oncogene FRAT1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28109,232,028 - 109,238,724 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110109,232,265 - 109,244,123 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01093,943,745 - 93,947,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FRAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28109,232,028 - 109,238,724 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110109,232,265 - 109,244,123 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01093,943,745 - 93,947,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FRAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381097,319,271 - 97,321,915 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1097,319,271 - 97,321,915 (+)EnsemblGRCh38hg38GRCh38
GRCh371099,079,028 - 99,081,672 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361099,069,012 - 99,071,662 (+)NCBINCBI36Build 36hg18NCBI36
Celera1092,817,506 - 92,820,157 (+)NCBICelera
Cytogenetic Map10q24.1NCBI
HuRef1092,704,738 - 92,707,056 (+)NCBIHuRef
CHM1_11099,360,764 - 99,363,411 (+)NCBICHM1_1
T2T-CHM13v2.01098,199,470 - 98,202,113 (+)NCBIT2T-CHM13v2.0
Frat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391941,818,409 - 41,821,022 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1941,818,409 - 41,821,022 (+)EnsemblGRCm39 Ensembl
GRCm381941,829,970 - 41,832,583 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1941,829,970 - 41,832,583 (+)EnsemblGRCm38mm10GRCm38
MGSCv371941,904,460 - 41,907,073 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361941,883,427 - 41,885,894 (+)NCBIMGSCv36mm8
Celera1942,629,318 - 42,631,931 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1935.3NCBI
Frat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,587,641 - 250,590,189 (+)NCBIGRCr8
mRatBN7.21240,638,309 - 240,640,857 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,638,296 - 240,640,945 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1248,783,574 - 248,786,144 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01255,480,727 - 255,483,297 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01248,133,737 - 248,136,307 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01261,071,965 - 261,075,244 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01268,509,986 - 268,527,716 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map1q54NCBI
Frat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555073,472,035 - 3,486,868 (+)NCBIChiLan1.0ChiLan1.0
FRAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12810,635,959 - 10,637,321 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2810,635,944 - 10,636,787 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2810,818,762 - 10,820,186 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02810,957,885 - 10,959,315 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12810,619,293 - 10,620,673 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02810,679,985 - 10,681,409 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02810,819,915 - 10,821,339 (+)NCBIUU_Cfam_GSD_1.0
Frat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721336,287,770 - 36,290,672 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366362,328,500 - 2,329,333 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366362,326,891 - 2,330,321 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FRAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14108,739,541 - 108,740,380 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114108,739,239 - 108,741,953 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FRAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1990,491,841 - 90,495,112 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl990,492,722 - 90,493,561 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604851,388,432 - 51,391,137 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034931240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_034931240   ⟹   XP_034787131
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v28109,232,028 - 109,238,724 (+)NCBI
NHGRI_mPanPan110109,232,265 - 109,244,123 (+)NCBI
Mhudiblu_PPA_v01093,943,745 - 93,947,162 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034787131 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_034787131   ⟸   XM_034931240


Additional Information

Database Acc Id Source(s)
NCBI Gene FRAT1 ENTREZGENE