FTLP12 (ferritin light chain pseudogene 12) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: FTLP12 (ferritin light chain pseudogene 12) Homo sapiens
Analyze
Symbol: FTLP12
Name: ferritin light chain pseudogene 12
RGD ID: 3077558
HGNC Page HGNC:37961
Description: INTERACTS WITH acrylamide
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ferritin, light polypeptide pseudogene 12
Related Functional Gene: FTL  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,391,434 - 16,391,883 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,391,434 - 16,391,882 (+)EnsemblGRCh38hg38GRCh38
GRCh371716,294,748 - 16,295,197 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1716,197,671 - 16,198,120 (+)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1716,161,321 - 16,161,770 (+)NCBIHuRef
CHM1_11716,304,469 - 16,304,918 (+)NCBICHM1_1
T2T-CHM13v2.01716,293,753 - 16,294,202 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
acrylamide  (EXP)

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:318
Count of miRNA genes:296
Interacting mature miRNAs:307
Transcripts:ENST00000578296
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 2 1 2 3
Low 176 9 185 153 361 157 234 32 156 34 232 223 6 9 8 3
Below cutoff 724 447 622 244 537 203 807 329 961 124 608 539 43 303 468

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000578296
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1716,391,434 - 16,391,882 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC FTLP12 COSMIC
Ensembl Genes ENSG00000265095 Ensembl, ENTREZGENE
GTEx ENSG00000265095 GTEx
HGNC ID HGNC:37961 ENTREZGENE
Human Proteome Map FTLP12 Human Proteome Map
NCBI Gene 100462792 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-28 FTLP12  ferritin light chain pseudogene 12    ferritin, light polypeptide pseudogene 12  Symbol and/or name change 5135510 APPROVED