ANP32BP1 (acidic nuclear phosphoprotein 32 family member B pseudogene 1) - Rat Genome Database

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Gene: ANP32BP1 (acidic nuclear phosphoprotein 32 family member B pseudogene 1) Homo sapiens
Analyze
Symbol: ANP32BP1
Name: acidic nuclear phosphoprotein 32 family member B pseudogene 1
RGD ID: 2947095
HGNC Page HGNC:24267
Description: INTERACTS WITH 3-isobutyl-1-methyl-7H-xanthine; bisphenol A; bisphenol F
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: ANP32B  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381575,321,582 - 75,322,706 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1575,321,773 - 75,322,509 (-)EnsemblGRCh38hg38GRCh38
GRCh371575,613,923 - 75,615,047 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,401,167 - 73,402,105 (-)NCBINCBI36Build 36hg18NCBI36
Celera1552,540,558 - 52,541,291 (-)NCBICelera
Cytogenetic Map15q24.2NCBI
HuRef1552,372,584 - 52,373,317 (-)NCBIHuRef
CHM1_11575,732,747 - 75,733,480 (-)NCBICHM1_1
T2T-CHM13v2.01573,191,642 - 73,192,766 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:286
Count of miRNA genes:263
Interacting mature miRNAs:269
Transcripts:ENST00000564205, ENST00000568553
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
PMC311040P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371575,614,404 - 75,614,553UniSTSGRCh37
Build 361573,401,457 - 73,401,606RGDNCBI36
Celera1552,540,845 - 52,540,994RGD
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map15q24.2UniSTS
HuRef1552,372,871 - 52,373,020UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 1
Low 247 281 177 58 293 59 635 87 294 146 457 464 9 127 383 2
Below cutoff 2016 2359 1221 340 1239 192 3507 1818 2907 157 851 1064 150 1047 2253

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000564205
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,321,397 - 75,322,693 (-)Ensembl
RefSeq Acc Id: ENST00000568553
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,321,773 - 75,322,509 (-)Ensembl
RefSeq Acc Id: XR_017650
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361573,401,167 - 73,402,105 (-)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC ANP32BP1 COSMIC
Ensembl Genes ENSG00000259790 Ensembl
  ENSG00000293333 ENTREZGENE
GTEx ENSG00000259790 GTEx
  ENSG00000293333 GTEx
HGNC ID HGNC:24267 ENTREZGENE
Human Proteome Map ANP32BP1 Human Proteome Map
NCBI Gene 646791 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-10 ANP32BP1  acidic nuclear phosphoprotein 32 family member B pseudogene 1    acidic (leucine-rich) nuclear phosphoprotein 32 family, member B pseudogene 1  Symbol and/or name change 5135510 APPROVED