HOTTIP (HOXA distal transcript antisense RNA) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: HOTTIP (HOXA distal transcript antisense RNA) Homo sapiens
Analyze
Symbol: HOTTIP
Name: HOXA distal transcript antisense RNA
RGD ID: 2792833
HGNC Page HGNC:37461
Description: Predicted to be involved in neuromuscular process controlling posture; post-anal tail morphogenesis; and striated muscle cell development. Predicted to act upstream of or within several processes, including bone morphogenesis; hindlimb morphogenesis; and skeletal muscle fiber development.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: REVIEWED
Previously known as: FLJ36668; HOXA-AS6; HOXA13-AS1; NCRNA00213
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38727,200,421 - 27,207,259 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl727,198,575 - 27,207,259 (+)EnsemblGRCh38hg38GRCh38
GRCh37727,240,040 - 27,246,878 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera727,228,994 - 27,231,387 (+)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef727,120,607 - 27,126,718 (+)NCBIHuRef
CHM1_1727,239,764 - 27,245,854 (+)NCBICHM1_1
T2T-CHM13v2.0727,336,410 - 27,343,254 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2727,291,225 - 27,297,319 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14702039   PMID:21423168   PMID:21483457   PMID:24018042   PMID:24114970   PMID:24342142   PMID:24381249   PMID:24910706   PMID:25424744   PMID:25889214   PMID:25912306   PMID:26043692  
PMID:26058875   PMID:26265284   PMID:26617868   PMID:26617875   PMID:26678886   PMID:26710269   PMID:27064878   PMID:27103834   PMID:27108607   PMID:27144338   PMID:27347311   PMID:27733185  
PMID:27748754   PMID:27806322   PMID:27806342   PMID:28036281   PMID:28164688   PMID:28384324   PMID:28484075   PMID:28534516   PMID:28778381   PMID:28781799   PMID:28782268   PMID:28818070  
PMID:28886531   PMID:28938659   PMID:28947139   PMID:29039502   PMID:29041935   PMID:29058802   PMID:29221115   PMID:29272003   PMID:29274585   PMID:29329159   PMID:29367594   PMID:29415429  
PMID:29474928   PMID:29698677   PMID:29884766   PMID:29917176   PMID:30021349   PMID:30024606   PMID:30226576   PMID:30229808   PMID:30452402   PMID:30511250   PMID:30676763   PMID:30685769  
PMID:30809864   PMID:30819158   PMID:30882398   PMID:30940774   PMID:30993787   PMID:31002141   PMID:31251124   PMID:31328440   PMID:31422060   PMID:31533774   PMID:31570281   PMID:31786140  
PMID:31910357   PMID:32067741   PMID:32081664   PMID:32120024   PMID:32307830   PMID:32335029   PMID:32442909   PMID:32539564   PMID:32725141   PMID:32783402   PMID:33000231   PMID:33028884  
PMID:33435956   PMID:33475442   PMID:33504462   PMID:33710684   PMID:33784880   PMID:34069089   PMID:34212978   PMID:34268972   PMID:35110549   PMID:35180428   PMID:35210436   PMID:35644412  
PMID:35921152   PMID:36438902   PMID:36482051   PMID:37392284  


Genomics

Comparative Map Data
HOTTIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38727,200,421 - 27,207,259 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl727,198,575 - 27,207,259 (+)EnsemblGRCh38hg38GRCh38
GRCh37727,240,040 - 27,246,878 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera727,228,994 - 27,231,387 (+)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef727,120,607 - 27,126,718 (+)NCBIHuRef
CHM1_1727,239,764 - 27,245,854 (+)NCBICHM1_1
T2T-CHM13v2.0727,336,410 - 27,343,254 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2727,291,225 - 27,297,319 (+)NCBI
Hottip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,239,760 - 52,244,588 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl652,239,760 - 52,244,588 (+)EnsemblGRCm39 Ensembl
GRCm38652,262,775 - 52,267,603 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,262,775 - 52,267,603 (+)EnsemblGRCm38mm10GRCm38
Celera652,784,237 - 52,789,065 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.41NCBI

Variants

.
Variants in HOTTIP
10 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7p22.3-14.1(chr7:54185-41875885)x3 copy number gain See cases [RCV000051159] Chr7:54185..41875885 [GRCh38]
Chr7:54185..41915483 [GRCh37]
Chr7:149268..41882008 [NCBI36]
Chr7:7p22.3-14.1		 pathogenic
GRCh38/hg38 7p15.2(chr7:27154807-27422335)x1 copy number loss See cases [RCV000052313] Chr7:27154807..27422335 [GRCh38]
Chr7:27194426..27461954 [GRCh37]
Chr7:27160951..27428479 [NCBI36]
Chr7:7p15.2		 pathogenic
GRCh38/hg38 7p15.2-14.3(chr7:25511691-30421133)x1 copy number loss See cases [RCV000052310] Chr7:25511691..30421133 [GRCh38]
Chr7:25551310..30460749 [GRCh37]
Chr7:25517835..30427274 [NCBI36]
Chr7:7p15.2-14.3		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7p15.2(chr7:27107301-27314586)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053436]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053436]|See cases [RCV000053436] Chr7:27107301..27314586 [GRCh38]
Chr7:27146920..27354205 [GRCh37]
Chr7:27113445..27320730 [NCBI36]
Chr7:7p15.2		 uncertain significance
GRCh38/hg38 7p22.3-14.2(chr7:54185-37089712)x3 copy number gain See cases [RCV000053530] Chr7:54185..37089712 [GRCh38]
Chr7:54185..37129317 [GRCh37]
Chr7:149268..37095842 [NCBI36]
Chr7:7p22.3-14.2		 pathogenic
GRCh38/hg38 7p21.1-15.2(chr7:20210912-27849400)x1 copy number loss See cases [RCV000134333] Chr7:20210912..27849400 [GRCh38]
Chr7:20250535..27889019 [GRCh37]
Chr7:20217060..27855544 [NCBI36]
Chr7:7p21.1-15.2		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7p21.1-14.3(chr7:20561456-32005143)x1 copy number loss See cases [RCV000136775] Chr7:20561456..32005143 [GRCh38]
Chr7:20601079..32044755 [GRCh37]
Chr7:20567604..32011280 [NCBI36]
Chr7:7p21.1-14.3		 pathogenic
GRCh38/hg38 7p22.1-15.2(chr7:5682209-27230311)x3 copy number gain See cases [RCV000136649] Chr7:5682209..27230311 [GRCh38]
Chr7:5721840..27269930 [GRCh37]
Chr7:5688366..27236455 [NCBI36]
Chr7:7p22.1-15.2		 pathogenic
GRCh38/hg38 7p22.3-15.2(chr7:1698124-27207295)x3 copy number gain See cases [RCV000143060] Chr7:1698124..27207295 [GRCh38]
Chr7:1737760..27246914 [GRCh37]
Chr7:1704286..27213439 [NCBI36]
Chr7:7p22.3-15.2		 pathogenic
GRCh37/hg19 7p15.3-14.3(chr7:22935369-32621975)x1 copy number loss See cases [RCV000240125] Chr7:22935369..32621975 [GRCh37]
Chr7:7p15.3-14.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
TMEM106B-BRAF fusion deletion Pleomorphic xanthoastrocytoma [RCV000454357] Chr7:12258147..140494267 [GRCh37]
Chr7:7p21.3-q34		 pathogenic
GRCh37/hg19 7p21.3-14.2(chr7:11562624-36395416)x3 copy number gain See cases [RCV000446478] Chr7:11562624..36395416 [GRCh37]
Chr7:7p21.3-14.2		 pathogenic
GRCh37/hg19 7p15.3-15.2(chr7:25448425-27578387)x3 copy number gain See cases [RCV000447735] Chr7:25448425..27578387 [GRCh37]
Chr7:7p15.3-15.2		 likely pathogenic
GRCh37/hg19 7p21.3-12.1(chr7:11048840-52863626)x3 copy number gain See cases [RCV000512091] Chr7:11048840..52863626 [GRCh37]
Chr7:7p21.3-12.1		 pathogenic
GRCh37/hg19 7p22.3-14.3(chr7:704573-29257946)x3 copy number gain See cases [RCV000510275] Chr7:704573..29257946 [GRCh37]
Chr7:7p22.3-14.3		 pathogenic
GRCh37/hg19 7p15.3-14.3(chr7:24344104-28879357)x1 copy number loss See cases [RCV000510695] Chr7:24344104..28879357 [GRCh37]
Chr7:7p15.3-14.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
NC_000007.13:g.(20954043_21001537)_(114528369_114556605)inv inversion Childhood apraxia of speech [RCV000234948] Chr7:21001537..114528369 [GRCh37]
Chr7:7p15.3-q31.1		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p15.2(chr7:27026872-27322106)x3 copy number gain not provided [RCV000746569] Chr7:27026872..27322106 [GRCh37]
Chr7:7p15.2		 benign
GRCh37/hg19 7p15.2(chr7:27065705-27286796)x1 copy number loss not provided [RCV000746570] Chr7:27065705..27286796 [GRCh37]
Chr7:7p15.2		 benign
GRCh37/hg19 7p15.2(chr7:27089764-27322106)x3 copy number gain not provided [RCV000746571] Chr7:27089764..27322106 [GRCh37]
Chr7:7p15.2		 benign
GRCh37/hg19 7p15.2(chr7:27118974-27264337)x3 copy number gain not provided [RCV000746572] Chr7:27118974..27264337 [GRCh37]
Chr7:7p15.2		 benign
GRCh37/hg19 7p15.2(chr7:27118974-27286796)x3 copy number gain not provided [RCV000746573] Chr7:27118974..27286796 [GRCh37]
Chr7:7p15.2		 benign
GRCh37/hg19 7p15.2(chr7:27123880-27286796)x1 copy number loss not provided [RCV000746574] Chr7:27123880..27286796 [GRCh37]
Chr7:7p15.2		 benign
GRCh37/hg19 7p15.2(chr7:27130276-27286796)x3 copy number gain not provided [RCV000746575] Chr7:27130276..27286796 [GRCh37]
Chr7:7p15.2		 benign
GRCh37/hg19 7p15.2(chr7:27135314-27264337)x3 copy number gain not provided [RCV000746576] Chr7:27135314..27264337 [GRCh37]
Chr7:7p15.2		 benign
GRCh37/hg19 7p15.2(chr7:27135314-27286796)x3 copy number gain not provided [RCV000746577] Chr7:27135314..27286796 [GRCh37]
Chr7:7p15.2		 benign
NC_000007.13:g.23236782_30690453del7453672 deletion Silver Russell Syndrome-related disorder [RCV000785664] Chr7:23236782..30690453 [GRCh37]
Chr7:7p15.3-14.3		 pathogenic
GRCh37/hg19 7p15.3-14.3(chr7:23877135-33139446)x1 copy number loss not provided [RCV001005924] Chr7:23877135..33139446 [GRCh37]
Chr7:7p15.3-14.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p21.3-14.2(chr7:10745750-35305167) copy number gain not specified [RCV002053668] Chr7:10745750..35305167 [GRCh37]
Chr7:7p21.3-14.2		 likely pathogenic
Single allele complex Ring chromosome 7 [RCV002280646] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p15.3-14.3(chr7:25451740-33864069) copy number loss Cyclical vomiting syndrome [RCV002280775] Chr7:25451740..33864069 [GRCh37]
Chr7:7p15.3-14.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:56604613-96692931)x1 copy number loss See cases [RCV002287832] Chr7:56604613..96692931 [GRCh37]
Chr7:7p22.3-q36.3		 uncertain significance
GRCh37/hg19 7p15.2-15.1(chr7:26418391-28323299)x3 copy number gain not provided [RCV002474593] Chr7:26418391..28323299 [GRCh37]
Chr7:7p15.2-15.1		 uncertain significance
GRCh37/hg19 7p15.2-14.3(chr7:27133786-34466477)x1 copy number loss not provided [RCV002475752] Chr7:27133786..34466477 [GRCh37]
Chr7:7p15.2-14.3		 pathogenic
GRCh37/hg19 7p21.1-14.3(chr7:17736012-30663423)x1 copy number loss not specified [RCV003986712] Chr7:17736012..30663423 [GRCh37]
Chr7:7p21.1-14.3		 pathogenic
GRCh37/hg19 7p21.3-15.2(chr7:13107394-27514163)x1 copy number loss not specified [RCV003986690] Chr7:13107394..27514163 [GRCh37]
Chr7:7p21.3-15.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:705
Count of miRNA genes:463
Interacting mature miRNAs:504
Transcripts:ENST00000421733, ENST00000472494, ENST00000521028, ENST00000605136
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
ECD02701  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,240,791 - 27,241,611UniSTSGRCh37
Build 36727,207,316 - 27,208,136RGDNCBI36
Celera727,229,729 - 27,230,549RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,121,358 - 27,122,178UniSTS
CRA_TCAGchr7v2727,291,976 - 27,292,796UniSTS
ECD04307  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,241,669 - 27,242,437UniSTSGRCh37
Build 36727,208,194 - 27,208,962RGDNCBI36
Celera727,230,607 - 27,231,375RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,122,236 - 27,123,004UniSTS
CRA_TCAGchr7v2727,292,854 - 27,293,622UniSTS
ECD04443  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,238,315 - 27,239,079UniSTSGRCh37
Build 36727,204,840 - 27,205,604RGDNCBI36
Celera727,227,252 - 27,228,016RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,118,879 - 27,119,643UniSTS
CRA_TCAGchr7v2727,289,499 - 27,290,263UniSTS
ECD05107  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,240,034 - 27,240,779UniSTSGRCh37
Build 36727,206,559 - 27,207,304RGDNCBI36
Celera727,228,972 - 27,229,717RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,120,601 - 27,121,346UniSTS
CRA_TCAGchr7v2727,291,219 - 27,291,964UniSTS
REN100771  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,238,962 - 27,239,194UniSTSGRCh37
Build 36727,205,487 - 27,205,719RGDNCBI36
Celera727,227,899 - 27,228,131RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,119,526 - 27,119,758UniSTS
CRA_TCAGchr7v2727,290,146 - 27,290,378UniSTS
REN100773  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,240,036 - 27,240,260UniSTSGRCh37
Build 36727,206,561 - 27,206,785RGDNCBI36
Celera727,228,974 - 27,229,198RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,120,603 - 27,120,827UniSTS
CRA_TCAGchr7v2727,291,221 - 27,291,445UniSTS
REN100774  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,240,252 - 27,240,510UniSTSGRCh37
Build 36727,206,777 - 27,207,035RGDNCBI36
Celera727,229,190 - 27,229,448RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,120,819 - 27,121,077UniSTS
CRA_TCAGchr7v2727,291,437 - 27,291,695UniSTS
REN100775  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,240,487 - 27,240,734UniSTSGRCh37
Build 36727,207,012 - 27,207,259RGDNCBI36
Celera727,229,425 - 27,229,672RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,121,054 - 27,121,301UniSTS
CRA_TCAGchr7v2727,291,672 - 27,291,919UniSTS
REN100776  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,240,712 - 27,240,944UniSTSGRCh37
Build 36727,207,237 - 27,207,469RGDNCBI36
Celera727,229,650 - 27,229,882RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,121,279 - 27,121,511UniSTS
CRA_TCAGchr7v2727,291,897 - 27,292,129UniSTS
REN100777  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,240,915 - 27,241,158UniSTSGRCh37
Build 36727,207,440 - 27,207,683RGDNCBI36
Celera727,229,853 - 27,230,096RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,121,482 - 27,121,725UniSTS
CRA_TCAGchr7v2727,292,100 - 27,292,343UniSTS
REN100778  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,241,125 - 27,241,386UniSTSGRCh37
Build 36727,207,650 - 27,207,911RGDNCBI36
Celera727,230,063 - 27,230,324RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,121,692 - 27,121,953UniSTS
CRA_TCAGchr7v2727,292,310 - 27,292,571UniSTS
REN100779  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,241,366 - 27,241,608UniSTSGRCh37
Build 36727,207,891 - 27,208,133RGDNCBI36
Celera727,230,304 - 27,230,546RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,121,933 - 27,122,175UniSTS
CRA_TCAGchr7v2727,292,551 - 27,292,793UniSTS
REN100780  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,241,584 - 27,241,849UniSTSGRCh37
Build 36727,208,109 - 27,208,374RGDNCBI36
Celera727,230,522 - 27,230,787RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,122,151 - 27,122,416UniSTS
CRA_TCAGchr7v2727,292,769 - 27,293,034UniSTS
REN100781  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,241,826 - 27,242,074UniSTSGRCh37
Build 36727,208,351 - 27,208,599RGDNCBI36
Celera727,230,764 - 27,231,012RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,122,393 - 27,122,641UniSTS
CRA_TCAGchr7v2727,293,011 - 27,293,259UniSTS
REN100782  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,242,051 - 27,242,320UniSTSGRCh37
Build 36727,208,576 - 27,208,845RGDNCBI36
Celera727,230,989 - 27,231,258RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,122,618 - 27,122,887UniSTS
CRA_TCAGchr7v2727,293,236 - 27,293,505UniSTS
stSG609402  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37727,240,256 - 27,241,431UniSTSGRCh37
Build 36727,206,781 - 27,207,956RGDNCBI36
Celera727,229,194 - 27,230,369RGD
Cytogenetic Map7p15.2UniSTS
HuRef727,120,823 - 27,121,998UniSTS
CRA_TCAGchr7v2727,291,441 - 27,292,616UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 194 2 2 5 2 1 7 160
Low 427 1 45 43 50 46 5 4 5 46 357 40 1 2
Below cutoff 702 809 460 128 354 87 2993 862 929 88 596 347 47 649 2033 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000421733
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl727,198,575 - 27,201,236 (+)Ensembl
RefSeq Acc Id: ENST00000472494
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl727,200,437 - 27,202,822 (+)Ensembl
RefSeq Acc Id: ENST00000521028
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl727,201,844 - 27,207,259 (+)Ensembl
RefSeq Acc Id: ENST00000605136
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl727,199,245 - 27,201,823 (+)Ensembl
RefSeq Acc Id: NR_037843
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38727,200,421 - 27,207,259 (+)NCBI
GRCh37727,240,040 - 27,246,139 (+)NCBI
HuRef727,120,607 - 27,126,718 (+)ENTREZGENE
CHM1_1727,239,764 - 27,246,593 (+)NCBI
T2T-CHM13v2.0727,336,410 - 27,343,254 (+)NCBI
CRA_TCAGchr7v2727,291,225 - 27,297,319 (+)ENTREZGENE
Sequence:
Promoters
RGD ID:15096118
Promoter ID:EPDNEWNC_H956
Type:initiation region
Name:HOTTIP_1
Description:HOXA distal transcript antisense RNA [Source:HGNCSymbol;Acc:HGNC:37461]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38727,200,460 - 27,200,520EPDNEWNC

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:37461 AgrOrtholog
COSMIC HOTTIP COSMIC
Ensembl Genes ENSG00000243766 Ensembl
GTEx ENSG00000243766 GTEx
HGNC ID HGNC:37461 ENTREZGENE
Human Proteome Map HOTTIP Human Proteome Map
NCBI Gene 100316868 ENTREZGENE
OMIM 614060 OMIM
PharmGKB PA165618182 PharmGKB
RNAcentral URS000075E1E7 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-21 HOTTIP  HOXA distal transcript antisense RNA  HOTTIP  HOXA distal transcript antisense RNA (non-protein coding)  Symbol and/or name change 5135510 APPROVED
2011-07-27 HOTTIP  HOXA distal transcript antisense RNA (non-protein coding)  NCRNA00213  non-protein coding RNA 213  Symbol and/or name change 5135510 APPROVED