Poteh (POTE ankyrin domain family member H) - Rat Genome Database

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Pathways
Gene: Poteh (POTE ankyrin domain family member H) Rattus norvegicus
Analyze
Symbol: Poteh
Name: POTE ankyrin domain family member H
RGD ID: 2323175
Description: Orthologous to human POTEH (POTE ankyrin domain family member H); INTERACTS WITH bisphenol A; glyphosate; 2,3',4,4',5-Pentachlorobiphenyl (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 26-like; coiled-coil domain-containing protein 144A-like; LOC100363368; mCG11429-like
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81519,559,450 - 19,654,345 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21517,131,582 - 17,219,924 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01518,919,299 - 19,008,178 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01522,885,738 - 22,973,003 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41519,121,888 - 19,160,715 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1517,086,946 - 17,173,612 (+)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Poteh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81519,559,450 - 19,654,345 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21517,131,582 - 17,219,924 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01518,919,299 - 19,008,178 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01522,885,738 - 22,973,003 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41519,121,888 - 19,160,715 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1517,086,946 - 17,173,612 (+)NCBICelera
Cytogenetic Map15p14NCBI
POTEH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382215,690,026 - 15,721,631 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2215,690,026 - 15,721,631 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh372216,256,332 - 16,287,937 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362214,636,332 - 14,667,937 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341419,058,805 - 19,090,272NCBI
Cytogenetic Map22q11.1NCBI
HuRef2272,736 - 82,738 (-)NCBIHuRef
CHM1_12216,257,042 - 16,288,874 (-)NCBICHM1_1
T2T-CHM13v2.02216,263,953 - 16,295,528 (+)NCBIT2T-CHM13v2.0
Ankrd68
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39223,094,769 - 23,157,141 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl223,097,488 - 23,157,489 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38223,204,748 - 23,267,129 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl223,207,476 - 23,267,129 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37223,062,996 - 23,122,649 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36223,029,485 - 23,089,127 (+)NCBIMGSCv36mm8
Celera222,939,280 - 22,999,116 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map215.25NCBI

Variants

.
Variants in Poteh
986 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat

Markers in Region
RH138186  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21517,131,344 - 17,131,590 (+)MAPPERmRatBN7.2
Rnor_6.01518,919,523 - 18,919,768NCBIRnor6.0
Rnor_5.01522,885,927 - 22,886,172UniSTSRnor5.0
RGSC_v3.41519,121,083 - 19,121,328UniSTSRGSC3.4
Celera1517,087,170 - 17,087,415UniSTS
RH 3.4 Map15144.9UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
265 146 714 1530 3792 820 1534 133 717 448 703 145 4910 2461 427 3718 38 1213 675 869 158 156

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006221898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001846230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005493886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_006251787   ⟹   XP_006251849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,646,791 (+)NCBI
mRatBN7.21517,131,582 - 17,216,595 (+)NCBI
Rnor_6.01518,919,302 - 19,008,177 (+)NCBI
Rnor_5.01522,885,738 - 22,973,003 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770604   ⟹   XP_008768826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,654,345 (+)NCBI
mRatBN7.21517,131,582 - 17,219,924 (+)NCBI
Rnor_6.01518,919,302 - 19,008,177 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008770605   ⟹   XP_008768827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,646,791 (+)NCBI
mRatBN7.21517,131,582 - 17,216,595 (+)NCBI
Rnor_6.01518,919,299 - 19,008,178 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039093754   ⟹   XP_038949682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,646,791 (+)NCBI
mRatBN7.21517,131,582 - 17,216,595 (+)NCBI
RefSeq Acc Id: XM_063274848   ⟹   XP_063130918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,562,393 - 19,646,791 (+)NCBI
RefSeq Acc Id: XM_063274849   ⟹   XP_063130919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,562,381 - 19,646,791 (+)NCBI
RefSeq Acc Id: XM_063274850   ⟹   XP_063130920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,583,088 - 19,646,791 (+)NCBI
RefSeq Acc Id: XR_001841483
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,646,791 (+)NCBI
mRatBN7.21517,131,582 - 17,216,595 (+)NCBI
Rnor_6.01518,919,303 - 19,003,707 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005493877
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,654,345 (+)NCBI
mRatBN7.21517,131,582 - 17,219,924 (+)NCBI
RefSeq Acc Id: XR_005493879
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,634,768 (+)NCBI
mRatBN7.21517,131,582 - 17,204,513 (+)NCBI
RefSeq Acc Id: XR_005493880
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,636,988 (+)NCBI
mRatBN7.21517,131,582 - 17,206,791 (+)NCBI
RefSeq Acc Id: XR_005493881
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,613,458 (+)NCBI
mRatBN7.21517,131,582 - 17,183,261 (+)NCBI
RefSeq Acc Id: XR_005493882
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,630,644 (+)NCBI
mRatBN7.21517,131,582 - 17,200,447 (+)NCBI
RefSeq Acc Id: XR_005493883
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,613,458 (+)NCBI
mRatBN7.21517,131,582 - 17,183,261 (+)NCBI
RefSeq Acc Id: XR_005493884
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,630,644 (+)NCBI
mRatBN7.21517,131,582 - 17,200,447 (+)NCBI
RefSeq Acc Id: XR_005493885
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,613,458 (+)NCBI
mRatBN7.21517,131,582 - 17,183,261 (+)NCBI
RefSeq Acc Id: XR_005493886
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,630,644 (+)NCBI
mRatBN7.21517,131,582 - 17,200,447 (+)NCBI
RefSeq Acc Id: XR_010058105
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,654,345 (+)NCBI
RefSeq Acc Id: XR_010058106
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,654,345 (+)NCBI
RefSeq Acc Id: XR_010058107
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,654,345 (+)NCBI
RefSeq Acc Id: XR_010058108
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81519,559,450 - 19,654,345 (+)NCBI
RefSeq Acc Id: XP_006251849   ⟸   XM_006251787
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008768827   ⟸   XM_008770605
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008768826   ⟸   XM_008770604
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_038949682   ⟸   XM_039093754
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063130919   ⟸   XM_063274849
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063130918   ⟸   XM_063274848
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063130920   ⟸   XM_063274850
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2323175 AgrOrtholog
BioCyc Gene G2FUF-14276 BioCyc
NCBI Gene 100363368 ENTREZGENE
PhenoGen Poteh PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-23 Poteh  POTE ankyrin domain family member H  LOC100363368  mCG11429-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100363368  mCG11429-like      Symbol and Name status set to provisional 70820 PROVISIONAL