MIR567 (microRNA 567) - Rat Genome Database

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Gene: MIR567 (microRNA 567) Homo sapiens
Analyze
Symbol: MIR567
Name: microRNA 567
RGD ID: 2312880
HGNC Page HGNC:32823
Description: Predicted to be involved in miRNA-mediated post-transcriptional gene silencing.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: hsa-mir-567; MIRN567
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383112,112,801 - 112,112,898 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3112,112,801 - 112,112,898 (+)EnsemblGRCh38hg38GRCh38
GRCh373111,831,648 - 111,831,745 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera3110,230,724 - 110,230,821 (+)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3109,206,429 - 109,206,526 (+)NCBIHuRef
CHM1_13111,795,670 - 111,795,767 (+)NCBICHM1_1
T2T-CHM13v2.03114,833,916 - 114,834,013 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:16381832   PMID:16505370   PMID:28000015   PMID:31012177   PMID:31078520   PMID:32729669   PMID:38182148   PMID:38494966  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3q11.1-13.31(chr3:93819623-116887056)x1 copy number loss See cases [RCV000135320] Chr3:93819623..116887056 [GRCh38]
Chr3:93538467..116605903 [GRCh37]
Chr3:95021157..118088593 [NCBI36]
Chr3:3q11.1-13.31		 pathogenic
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 copy number gain See cases [RCV000134948] Chr3:103426882..198110178 [GRCh38]
Chr3:103145726..197837049 [GRCh37]
Chr3:104628416..199321446 [NCBI36]
Chr3:3q13.11-29		 pathogenic
GRCh38/hg38 3q11.2-13.31(chr3:97795369-115663349)x1 copy number loss See cases [RCV000138186] Chr3:97795369..115663349 [GRCh38]
Chr3:97514213..115382196 [GRCh37]
Chr3:98996903..116864886 [NCBI36]
Chr3:3q11.2-13.31		 pathogenic|uncertain significance
GRCh38/hg38 3q11.1-24(chr3:93800620-145695381)x3 copy number gain See cases [RCV000142340] Chr3:93800620..145695381 [GRCh38]
Chr3:93519464..145413168 [GRCh37]
Chr3:95002154..146895858 [NCBI36]
Chr3:3q11.1-24		 pathogenic
GRCh38/hg38 3q13.11-13.31(chr3:104621220-116093884)x3 copy number gain See cases [RCV000051722] Chr3:104621220..116093884 [GRCh38]
Chr3:104340064..115812731 [GRCh37]
Chr3:105822754..117295421 [NCBI36]
Chr3:3q13.11-13.31		 pathogenic
GRCh38/hg38 3q11.1-21.1(chr3:93886671-123216683)x1 copy number loss See cases [RCV000051543] Chr3:93886671..123216683 [GRCh38]
Chr3:93605515..122935530 [GRCh37]
Chr3:95088205..124418220 [NCBI36]
Chr3:3q11.1-21.1		 pathogenic
GRCh38/hg38 3q13.13-13.31(chr3:108242572-116169331)x1 copy number loss See cases [RCV000051544] Chr3:108242572..116169331 [GRCh38]
Chr3:107961419..115888178 [GRCh37]
Chr3:109444109..117370868 [NCBI36]
Chr3:3q13.13-13.31		 pathogenic
GRCh38/hg38 3q11.1-21.2(chr3:93979547-124774010)x1 copy number loss Chromosome 3q13.31 deletion syndrome [RCV003327614] Chr3:93979547..124774010 [GRCh38]
Chr3:3q11.1-21.2		 pathogenic
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:11673
Count of gene targets:5142
Count of transcripts:9197
Interacting mature miRNAs:hsa-miR-567
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 3 1 1
Low 178 104 302 43 92 29 1125 49 92 85 153 435 20 31 615 1
Below cutoff 203 114 125 39 58 9 211 78 101 49 99 147 31 54 112 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000385205
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3112,112,801 - 112,112,898 (+)Ensembl
RefSeq Acc Id: NR_030292
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh383112,112,801 - 112,112,898 (+)NCBI
GRCh373111,831,648 - 111,831,745 (+)RGD
Celera3110,230,724 - 110,230,821 (+)RGD
HuRef3109,206,429 - 109,206,526 (+)ENTREZGENE
CHM1_13111,795,670 - 111,795,767 (+)NCBI
T2T-CHM13v2.03114,833,916 - 114,834,013 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC MIR567 COSMIC
Ensembl Genes ENSG00000207940 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000385205 ENTREZGENE
GTEx ENSG00000207940 GTEx
HGNC ID HGNC:32823 ENTREZGENE
Human Proteome Map MIR567 Human Proteome Map
miRBase MI0003573 ENTREZGENE
NCBI Gene 693152 ENTREZGENE
PharmGKB PA164722864 PharmGKB
RNAcentral URS00006CB61F RNACentral
  URS000075CED1 RNACentral