Gm6982 (predicted gene 6982) - Rat Genome Database

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Gene: Gm6982 (predicted gene 6982) Mus musculus
Analyze
Symbol: Gm6982
Name: predicted gene 6982
RGD ID: 2310418
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG629568
Related Functional Gene: Sgo1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X91,637,293 - 91,639,171 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX91,637,415 - 91,638,974 (+)EnsemblGRCm39 Ensembl
GRCm38X92,593,687 - 92,595,565 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX92,593,809 - 92,595,368 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X89,839,148 - 89,840,707 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X89,839,148 - 89,840,707 (+)NCBIMGSCv36mm8
CeleraX79,538,503 - 79,540,059 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX40.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm6982
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:81
Count of miRNA genes:78
Interacting mature miRNAs:81
Transcripts:ENSMUST00000118752
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse

Markers in Region
px-38b6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382109,426,145 - 109,426,257UniSTSGRCm38
GRCm38X92,737,787 - 92,737,900UniSTSGRCm38
MGSCv37X89,983,126 - 89,983,239UniSTSGRCm37
MGSCv372109,266,302 - 109,266,414UniSTSGRCm37
Celera2110,587,251 - 110,587,363UniSTS
CeleraX79,680,002 - 79,680,115UniSTS
Cytogenetic MapXC3UniSTS
px-64e8  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X92,696,206 - 92,696,357UniSTSGRCm38
MGSCv37X89,941,545 - 89,941,696UniSTSGRCm37
CeleraX79,639,306 - 79,639,457UniSTS
Cytogenetic MapXC3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_028416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX571789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000118752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX91,637,415 - 91,638,974 (+)Ensembl
GRCm38.p6 EnsemblX92,593,809 - 92,595,368 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080737 Ensembl, ENTREZGENE
MGD MGI:3643575 ENTREZGENE
NCBI Gene 100534312 ENTREZGENE
PhenoGen Gm6982 PhenoGen