Gm7707 (predicted gene 7707) - Rat Genome Database

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Gene: Gm7707 (predicted gene 7707) Mus musculus
Analyze
Symbol: Gm7707
Name: predicted gene 7707
RGD ID: 2310326
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG665601
Related Functional Gene: Emc2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391431,988,548 - 31,989,724 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1431,988,550 - 31,989,705 (-)EnsemblGRCm39 Ensembl
GRCm381432,266,591 - 32,267,767 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1432,266,593 - 32,267,748 (-)EnsemblGRCm38mm10GRCm38
MGSCv371433,079,862 - 33,080,953 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361431,095,882 - 31,096,744 (-)NCBIMGSCv36mm8
Celera1428,525,342 - 28,526,433 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm7707
66 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:45
Interacting mature miRNAs:47
Transcripts:ENSMUST00000165950
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse

Markers in Region
UniSTS:237156  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381432,267,531 - 32,267,726UniSTSGRCm38
MGSCv371433,080,717 - 33,080,912UniSTSGRCm37
Celera1428,526,197 - 28,526,392UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map15B3.2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_019890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000165950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1431,988,550 - 31,989,705 (-)Ensembl
GRCm38.p6 Ensembl1432,266,593 - 32,267,748 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091570 Ensembl, ENTREZGENE
MGD MGI:3646976 ENTREZGENE
NCBI Gene 665601 ENTREZGENE
PhenoGen Gm7707 PhenoGen