Adh6-ps1 (alcohol dehydrogenase 6 (class V), pseudogene 1) - Rat Genome Database

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Pathways
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Gene: Adh6-ps1 (alcohol dehydrogenase 6 (class V), pseudogene 1) Mus musculus
Analyze
Symbol: Adh6-ps1
Name: alcohol dehydrogenase 6 (class V), pseudogene 1
RGD ID: 2309912
MGI Page MGI
Description: INTERACTS WITH (1->4)-beta-D-glucan; 2,3,7,8-tetrachlorodibenzodioxine; 2-acetamidofluorene
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: 1300002P07Rik; 639769; Adh; Adh5ps; Gm7277
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393138,079,882 - 138,094,052 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3138,079,882 - 138,100,864 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl3138,079,951 - 138,100,763 (+)EnsemblGRCm39 Ensembl
GRCm383138,374,121 - 138,388,291 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3138,374,121 - 138,395,002 (+)EnsemblGRCm38mm10GRCm38
MGSCv373138,037,085 - 138,051,255 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363138,037,154 - 138,058,050 (+)NCBIMGSCv36mm8
Cytogenetic Map3G3NCBI
cM Map364.22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11784316   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18802746  


Genomics

Variants

.
Variants in Adh6-ps1
588 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:707
Count of miRNA genes:446
Interacting mature miRNAs:528
Transcripts:ENSMUST00000171054
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
4142245Pstc1_mperiosteal circumference 1 (mouse)Not determined3126270248159745316Mouse
1301218Letohc1_mlow ethanol consumption 1 (mouse)Not determined3126352986159745316Mouse
1301347Fpli_mfasting plasma insulin (mouse)Not determined3126460514159745316Mouse
1301563Alcp3_malcohol preference locus 3 (mouse)Not determined3130736935159745316Mouse
11039523Tbbr1_mTrypanosoma brucei brucei response 1 (mouse)3130849375159745316Mouse
1300753Eae10_msusceptibility to experimental allergic encephalomyelitis 10 (mouse)Not determined3131736617148451178Mouse
10412120Ccs3_mcolon cancer susceptibility 3 (mouse)Not determined3131754536146017669Mouse
1301528Loco1_mlocomotor activity 1 (mouse)Not determined3133461893159745316Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000171054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3138,079,882 - 138,094,052 (+)Ensembl
GRCm38.p6 Ensembl3138,374,121 - 138,388,291 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3138,079,951 - 138,100,763 (+)Ensembl
GRCm38.p6 Ensembl3138,374,190 - 138,395,002 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3138,079,882 - 138,100,864 (+)Ensembl
RefSeq Acc Id: NR_033581
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393138,079,882 - 138,094,052 (+)NCBI
GRCm383138,374,121 - 138,388,291 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAB23624 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:6882486
Promoter ID:EPDNEW_M4694
Type:multiple initiation site
Name:Adh6-ps1_1
Description:Mus musculus alcohol dehydrogenase 6 , pseudogene 1 (Adh6-ps1),non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383138,374,121 - 138,374,181EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090306 Ensembl
  ENSMUSG00000121473 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000171054 ENTREZGENE
MGD MGI:1918999 ENTREZGENE
NCBI Gene 639769 ENTREZGENE
PhenoGen Adh6-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-05-15 Adh6-ps1  alcohol dehydrogenase 6 (class V), pseudogene 1  Adh6-ps1  alcohol dehydrogenase 6 (class V), pseudogene 1  Data merged from RGD:1622279 737654 PROVISIONAL
2014-09-17 Adh6-ps1  alcohol dehydrogenase 6 (class V), pseudogene 1  Gm7277  predicted gene 7277  Symbol and/or name change 5135510 APPROVED