Rpl7a-ps1 (ribosomal protein L7A, pseudogene 1) - Rat Genome Database

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Gene: Rpl7a-ps1 (ribosomal protein L7A, pseudogene 1) Mus musculus
Analyze
Symbol: Rpl7a-ps1
Name: ribosomal protein L7A, pseudogene 1
RGD ID: 2309640
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG217647; Gm4807
Related Functional Gene: Rpl7a  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391264,923,560 - 64,924,406 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1264,923,610 - 64,924,402 (-)EnsemblGRCm39 Ensembl
GRCm381264,876,786 - 64,877,632 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1264,876,836 - 64,877,628 (-)EnsemblGRCm38mm10GRCm38
MGSCv371265,977,773 - 65,978,619 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361265,795,433 - 65,796,233 (-)NCBIMGSCv36mm8
Celera1266,011,378 - 66,012,224 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1227.18NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:20003482  


Genomics

Variants

.
Variants in Rpl7a-ps1
13 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_012580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CT030241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000223350
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1264,923,610 - 64,924,402 (-)Ensembl
GRCm38.p6 Ensembl1264,876,836 - 64,877,628 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000113075 Ensembl, ENTREZGENE
MGD MGI:3642946 ENTREZGENE
NCBI Gene 217647 ENTREZGENE
PhenoGen Rpl7a-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rpl7a-ps1  ribosomal protein L7A, pseudogene 1  Gm4807  predicted gene 4807  Symbol and/or name change 5135510 APPROVED