Gm5790 (predicted gene 5790) - Rat Genome Database

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Gene: Gm5790 (predicted gene 5790) Mus musculus
Analyze
Symbol: Gm5790
Name: predicted gene 5790
RGD ID: 2308714
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 544928
Related Functional Gene: Coro1c  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391347,162,822 - 47,164,518 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1347,163,009 - 47,164,421 (-)EnsemblGRCm39 Ensembl
GRCm381347,009,346 - 47,011,042 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1347,009,533 - 47,010,945 (-)EnsemblGRCm38mm10GRCm38
MGSCv371347,104,715 - 47,106,411 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361347,020,319 - 47,022,163 (-)NCBIMGSCv36mm8
Celera1348,094,579 - 48,096,284 (-)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1324.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:8889548  


Genomics

Variants

.
Variants in Gm5790
36 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
12738427Lfibq24_mliver fibrosis QTL 24 (mouse)134425810752758667Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse

Markers in Region
RH136312  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381347,008,378 - 47,008,577UniSTSGRCm38
MGSCv371347,103,747 - 47,103,946UniSTSGRCm37
Celera1348,093,621 - 48,093,820UniSTS
Cytogenetic Map13A5UniSTS
AI505271  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381347,012,713 - 47,012,830UniSTSGRCm38
MGSCv371347,108,082 - 47,108,199UniSTSGRCm37
Celera1348,097,954 - 48,098,071UniSTS
Cytogenetic Map13A5UniSTS
Whitehead/MRC_RH13487.79UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_016683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC096628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000225443
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1347,163,009 - 47,164,421 (-)Ensembl
GRCm38.p6 Ensembl1347,009,533 - 47,010,945 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000114858 Ensembl, ENTREZGENE
MGD MGI:3779518 ENTREZGENE
NCBI Gene 544928 ENTREZGENE
PhenoGen Gm5790 PhenoGen