Gm9578 (predicted gene 9578) - Rat Genome Database

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Gene: Gm9578 (predicted gene 9578) Mus musculus
Analyze
Symbol: Gm9578
Name: predicted gene 9578
RGD ID: 2308344
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 672828
Related Functional Gene: Gapdh  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391480,579,164 - 80,579,975 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1480,579,173 - 80,579,925 (-)EnsemblGRCm39 Ensembl
GRCm381480,341,724 - 80,342,535 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1480,341,733 - 80,342,485 (-)EnsemblGRCm38mm10GRCm38
MGSCv371480,741,531 - 80,742,342 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361480,741,501 - 80,876,868 (-)NCBIMGSCv36mm8
Celera1477,837,170 - 77,838,034 (-)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1442.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm9578
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:117
Interacting mature miRNAs:119
Transcripts:ENSMUST00000182354
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000182354
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1480,579,173 - 80,579,925 (-)Ensembl
GRCm38.p6 Ensembl1480,341,733 - 80,342,485 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098125 Ensembl, ENTREZGENE
MGD MGI:3779987 ENTREZGENE
NCBI Gene 672828 ENTREZGENE
PhenoGen Gm9578 PhenoGen