Gm7896 (predicted gene 7869) - Rat Genome Database

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Gene: Gm7896 (predicted gene 7869) Mus musculus
Analyze
Symbol: Gm7896
Name: predicted gene 7869
RGD ID: 2308118
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 666027; predicted gene 7896; zinc finger protein 431-like
Related Functional Gene: Zfp997  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391366,940,620 - 66,950,627 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1366,940,134 - 66,943,088 (-)EnsemblGRCm39 Ensembl
GRCm381366,792,556 - 66,802,563 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1366,792,070 - 66,802,560 (-)EnsemblGRCm38mm10GRCm38
MGSCv371366,815,592 - 66,903,500 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv371366,815,592 - 66,903,500 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361367,150,405 - 67,238,313 (-)NCBIMGSCv36mm8
Cytogenetic Map13B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12520002   PMID:14610273   PMID:18799693  


Genomics

Variants

.
Variants in Gm7896
327 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000224253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1366,940,134 - 66,943,088 (-)Ensembl
GRCm38.p6 Ensembl1366,792,070 - 66,795,024 (-)Ensembl
RefSeq Acc Id: ENSMUST00000224917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1366,941,416 - 66,950,624 (-)Ensembl
GRCm38.p6 Ensembl1366,793,352 - 66,802,560 (-)Ensembl
RefSeq Acc Id: XM_030247512   ⟹   XP_030103372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381366,792,556 - 66,802,563 (-)NCBI
Sequence:
Promoters
RGD ID:6823959
Promoter ID:MM_KWN:14534
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:XM_001478466_GM3870,   XM_981055_GM7896
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361366,903,501 - 66,904,001 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000114353 Ensembl
  ENSMUSG00000121625 ENTREZGENE
MGD MGI:3779770 ENTREZGENE
NCBI Gene Gm7896 ENTREZGENE
PhenoGen Gm7896 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-01-14 Gm7896  predicted gene 7869    predicted gene 7896  Symbol and/or name change 5135510 APPROVED