Gm9449 (predicted gene 9449) - Rat Genome Database

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Gene: Gm9449 (predicted gene 9449) Mus musculus
Analyze
Symbol: Gm9449
Name: predicted gene 9449
RGD ID: 2307629
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Socs6  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397107,550,524 - 107,551,663 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7107,550,553 - 107,551,563 (-)EnsemblGRCm39 Ensembl
GRCm387107,951,345 - 107,952,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7107,951,346 - 107,952,356 (-)EnsemblGRCm38mm10GRCm38
MGSCv377115,094,850 - 115,095,870 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367115,091,382 - 115,096,258 (-)NCBIMGSCv36mm8
Celera7107,926,866 - 107,927,886 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm9449
39 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
25394573Skmw62_mskeletal muscle weight 62, gastroc (mouse)7106893715110612309Mouse
13524524Bodwtq6_mbody wweight QTL 6 (mouse)7107245693113055693Mouse

Markers in Region
Socs6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv377115,094,872 - 115,095,181UniSTSGRCm37
MGSCv371889,039,206 - 89,039,516UniSTSGRCm37
MGSCv377115,095,414 - 115,095,932UniSTSGRCm37
MGSCv371889,039,725 - 89,040,243UniSTSGRCm37
Celera1890,597,496 - 90,598,014UniSTS
Celera7107,927,430 - 107,927,948UniSTS
Celera1890,596,977 - 90,597,287UniSTS
Celera7107,926,888 - 107,927,197UniSTS
cM Map18 UniSTS
Socs6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381888,870,333 - 88,870,851UniSTSGRCm38
GRCm387107,951,900 - 107,952,418UniSTSGRCm38
MGSCv371889,039,725 - 89,040,243UniSTSGRCm37
MGSCv377115,095,414 - 115,095,932UniSTSGRCm37
Celera1890,597,496 - 90,598,014UniSTS
Celera7107,927,430 - 107,927,948UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map18E4UniSTS
cM Map18 UniSTS
Socs6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381888,869,814 - 88,870,124UniSTSGRCm38
GRCm387107,951,358 - 107,951,667UniSTSGRCm38
MGSCv371889,039,206 - 89,039,516UniSTSGRCm37
MGSCv377115,094,872 - 115,095,181UniSTSGRCm37
Celera1890,596,977 - 90,597,287UniSTS
Celera7107,926,888 - 107,927,197UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map18E4UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_019105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000207265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7107,550,553 - 107,551,563 (-)Ensembl
GRCm38.p6 Ensembl7107,951,346 - 107,952,356 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000108892 Ensembl, ENTREZGENE
MGD MGI:3779859 ENTREZGENE
NCBI Gene 669301 ENTREZGENE
PhenoGen Gm9449 PhenoGen