Vmn1r61 (vomeronasal 1 receptor 61) - Rat Genome Database

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Gene: Vmn1r61 (vomeronasal 1 receptor 61) Mus musculus
Analyze
Symbol: Vmn1r61
Name: vomeronasal 1 receptor 61
RGD ID: 2306866
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Gm7186; vomernasal 1 receptor Vmn1r61
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3975,613,410 - 5,614,312 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl75,604,646 - 5,616,294 (-)EnsemblGRCm39 Ensembl
GRCm3875,610,411 - 5,611,313 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl75,601,647 - 5,613,295 (-)EnsemblGRCm38mm10GRCm38
MGSCv3775,562,013 - 5,562,915 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3675,561,984 - 5,563,680 (-)NCBIMGSCv36mm8
Celera75,354,265 - 5,355,167 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map73.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19952141   PMID:20003482   PMID:21873635  


Genomics

Variants

.
Variants in Vmn1r61
36 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:104
Interacting mature miRNAs:105
Transcripts:ENSMUST00000164880
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000164880   ⟹   ENSMUSP00000128012
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,612,827 - 5,614,488 (-)Ensembl
GRCm38.p6 Ensembl75,609,828 - 5,611,489 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,604,646 - 5,616,294 (-)Ensembl
GRCm38.p6 Ensembl75,601,647 - 5,613,295 (-)Ensembl
RefSeq Acc Id: ENSMUST00000238026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,604,646 - 5,616,294 (-)Ensembl
GRCm38.p6 Ensembl75,601,647 - 5,613,295 (-)Ensembl
RefSeq Acc Id: ENSMUST00000238042   ⟹   ENSMUSP00000157894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,604,646 - 5,614,488 (-)Ensembl
GRCm38.p6 Ensembl75,601,647 - 5,611,489 (-)Ensembl
RefSeq Acc Id: NM_001166733   ⟹   NP_001160205
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,613,410 - 5,614,312 (-)NCBI
GRCm3875,610,411 - 5,611,313 (-)ENTREZGENE
MGSCv3775,562,013 - 5,562,915 (-)RGD
Celera75,354,265 - 5,355,167 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001160205 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL31300 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000128012
  ENSMUSP00000128012.2
  ENSMUSP00000157894.2
Reference Protein Sequences
RefSeq Acc Id: NP_001160205   ⟸   NM_001166733
- Peptide Label: precursor
- UniProtKB: W4VSP5 (UniProtKB/TrEMBL),   A0A494BA35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000128012   ⟸   ENSMUST00000164880
RefSeq Acc Id: ENSMUSP00000157894   ⟸   ENSMUST00000238042
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-W4VSP5-F1-model_v2 AlphaFold W4VSP5 1-300 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000117863 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000164880 ENTREZGENE
  ENSMUST00000164880.4 UniProtKB/TrEMBL
  ENSMUST00000238042.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:636731 UniProtKB/TrEMBL
MGD MGI:3779692 ENTREZGENE
NCBI Gene 636731 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r61 PhenoGen
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A494BA35 ENTREZGENE
  W4VSP5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r61  vomeronasal 1 receptor 61  Gm7186  predicted gene 7186  Symbol and/or name change 5135510 APPROVED