RPL10P9 (ribosomal protein L10 pseudogene 9) - Rat Genome Database

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Gene: RPL10P9 (ribosomal protein L10 pseudogene 9) Homo sapiens
Analyze
Symbol: RPL10P9
Name: ribosomal protein L10 pseudogene 9
RGD ID: 2305739
HGNC Page HGNC:35579
Description: INTERACTS WITH butan-1-ol; chloropicrin; ethanol
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL10_1_637
Related Functional Gene: RPL10  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385168,616,311 - 168,617,055 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5168,616,352 - 168,616,996 (+)EnsemblGRCh38hg38GRCh38
GRCh375168,043,316 - 168,044,060 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365167,975,757 - 167,980,168 (+)NCBINCBI36Build 36hg18NCBI36
Celera5164,078,645 - 164,079,369 (+)NCBICelera
Cytogenetic Map5q34NCBI
HuRef5163,141,783 - 163,142,507 (+)NCBIHuRef
CHM1_15167,476,226 - 167,476,950 (+)NCBICHM1_1
T2T-CHM13v2.05169,151,088 - 169,151,831 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:281
Count of miRNA genes:212
Interacting mature miRNAs:217
Transcripts:ENST00000406049, ENST00000522551
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 641 937 379 119 750 57 1447 589 797 43 457 453 65 401 978 1
Low 1753 2006 1292 459 1127 362 2815 1567 2678 286 930 1060 101 803 1810 2
Below cutoff 34 39 48 40 61 40 78 36 230 82 53 77 3 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000522551
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5168,616,352 - 168,616,996 (+)Ensembl
RefSeq Acc Id: XM_931532
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 365167,975,757 - 167,980,168 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC RPL10P9 COSMIC
Ensembl Genes ENSG00000233913 Ensembl, ENTREZGENE
GTEx ENSG00000233913 GTEx
HGNC ID HGNC:35579 ENTREZGENE
Human Proteome Map RPL10P9 Human Proteome Map
NCBI Gene 389342 ENTREZGENE