RPL26P28 (ribosomal protein L26 pseudogene 28) - Rat Genome Database

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Gene: RPL26P28 (ribosomal protein L26 pseudogene 28) Homo sapiens
Analyze
Symbol: RPL26P28
Name: ribosomal protein L26 pseudogene 28
RGD ID: 2305710
HGNC Page HGNC:35776
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL26_8_1018
Related Functional Gene: RPL26  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38105,304,380 - 5,304,901 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl105,304,431 - 5,304,865 (-)EnsemblGRCh38hg38GRCh38
GRCh37105,346,343 - 5,346,864 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36105,336,391 - 5,336,828 (-)NCBINCBI36Build 36hg18NCBI36
Celera105,260,296 - 5,260,817 (-)NCBICelera
Cytogenetic Map10p15.1NCBI
HuRef105,278,683 - 5,279,204 (-)NCBIHuRef
CHM1_1105,346,295 - 5,346,816 (-)NCBICHM1_1
T2T-CHM13v2.0105,306,112 - 5,306,632 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:98
Interacting mature miRNAs:98
Transcripts:ENST00000451325
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D10S1713  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37105,328,570 - 5,328,818UniSTSGRCh37
Build 36105,318,570 - 5,318,818RGDNCBI36
Celera105,261,895 - 5,262,143RGD
Cytogenetic Map10p15.1UniSTS
HuRef105,260,902 - 5,261,158UniSTS
Marshfield Genetic Map1013.49UniSTS
Marshfield Genetic Map1013.49RGD
Genethon Genetic Map1013.0UniSTS
TNG Radiation Hybrid Map102724.0UniSTS
Stanford-G3 RH Map10181.0UniSTS
GeneMap99-GB4 RH Map1052.22UniSTS
NCBI RH Map10112.5UniSTS
GeneMap99-G3 RH Map10181.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 14 4 5 35 1 1 7 47 27 1
Below cutoff 252 214 127 62 224 28 337 132 127 35 274 239 36 154 193 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000451325
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl105,304,431 - 5,304,865 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL26P28 COSMIC
Ensembl Genes ENSG00000223987 Ensembl, ENTREZGENE
GTEx ENSG00000223987 GTEx
HGNC ID HGNC:35776 ENTREZGENE
Human Proteome Map RPL26P28 Human Proteome Map
NCBI Gene 100130983 ENTREZGENE