RPSAP59 (ribosomal protein SA pseudogene 59) - Rat Genome Database

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Gene: RPSAP59 (ribosomal protein SA pseudogene 59) Homo sapiens
Analyze
Symbol: RPSAP59
Name: ribosomal protein SA pseudogene 59
RGD ID: 2305044
HGNC Page HGNC:36957
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPSA_27_1799
Related Functional Gene: RPSA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X103,206,009 - 103,206,899 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX103,206,010 - 103,206,899 (-)EnsemblGRCh38hg38GRCh38
GRCh37X102,460,937 - 102,461,827 (-)NCBIGRCh37GRCh37hg19GRCh37
CeleraX102,899,948 - 102,900,838 (-)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX92,123,991 - 92,124,881 (-)NCBIHuRef
CHM1_1X102,353,945 - 102,354,835 (-)NCBICHM1_1
T2T-CHM13v2.0X101,653,001 - 101,653,891 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:47
Interacting mature miRNAs:48
Transcripts:ENST00000421048
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 3
Below cutoff 58 77 82 22 32 4 149 31 385 10 114 71 18 37 85

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000421048
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX103,206,010 - 103,206,899 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPSAP59 COSMIC
Ensembl Genes ENSG00000233071 Ensembl, ENTREZGENE
GTEx ENSG00000233071 GTEx
HGNC ID HGNC:36957 ENTREZGENE
Human Proteome Map RPSAP59 Human Proteome Map
NCBI Gene 100271148 ENTREZGENE