RPL21P42 (ribosomal protein L21 pseudogene 42) - Rat Genome Database

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Gene: RPL21P42 (ribosomal protein L21 pseudogene 42) Homo sapiens
Analyze
Symbol: RPL21P42
Name: ribosomal protein L21 pseudogene 42
RGD ID: 2305030
HGNC Page HGNC:37017
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL21_13_421
Related Functional Gene: RPL21  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383154,023,796 - 154,024,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3154,023,835 - 154,024,298 (+)EnsemblGRCh38hg38GRCh38
GRCh373153,741,585 - 153,742,126 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera3152,159,104 - 152,159,645 (+)NCBICelera
Cytogenetic Map3q25.2NCBI
HuRef3151,133,217 - 151,133,758 (+)NCBIHuRef
CHM1_13153,704,783 - 153,705,324 (+)NCBICHM1_1
T2T-CHM13v2.03156,794,811 - 156,795,352 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:51
Interacting mature miRNAs:52
Transcripts:ENST00000488408
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 45 16 104 2 13 1 316 23 492 6 84 115 1 4 309
Below cutoff 766 371 459 63 96 30 801 453 1913 39 472 545 34 145 570

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000488408
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3154,023,835 - 154,024,298 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL21P42 COSMIC
Ensembl Genes ENSG00000240068 Ensembl, ENTREZGENE
GTEx ENSG00000240068 GTEx
HGNC ID HGNC:37017 ENTREZGENE
Human Proteome Map RPL21P42 Human Proteome Map
NCBI Gene 100271162 ENTREZGENE