RPS2P36 (ribosomal protein S2 pseudogene 36) - Rat Genome Database

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Gene: RPS2P36 (ribosomal protein S2 pseudogene 36) Homo sapiens
Analyze
Symbol: RPS2P36
Name: ribosomal protein S2 pseudogene 36
RGD ID: 2304923
HGNC Page HGNC:36784
Description: INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS2_13_1085
Related Functional Gene: RPS2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381096,620,877 - 96,621,707 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1096,620,877 - 96,621,707 (-)EnsemblGRCh38hg38GRCh38
GRCh371098,380,634 - 98,381,464 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361098,380,634 - 98,381,464 (-)NCBINCBI36Build 36hg18NCBI36
Celera1092,123,004 - 92,123,834 (-)NCBICelera
Cytogenetic Map10q24.1NCBI
HuRef1092,010,070 - 92,010,900 (-)NCBIHuRef
CHM1_11098,662,432 - 98,663,262 (-)NCBICHM1_1
T2T-CHM13v2.01097,501,970 - 97,502,800 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:19123937  


Genomics

Variants

.
Variants in RPS2P36
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:123
Count of miRNA genes:120
Interacting mature miRNAs:123
Transcripts:ENST00000456516
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 49 2 1
Low 83 399 209 240 1033 165 118 6 63 14 42 339 75 87 55 1
Below cutoff 1057 1239 958 300 607 228 1818 682 1390 179 683 745 74 814 1097 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000456516
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1096,620,877 - 96,621,707 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS2P36 COSMIC
Ensembl Genes ENSG00000227032 Ensembl, ENTREZGENE
GTEx ENSG00000227032 GTEx
HGNC ID HGNC:36784 ENTREZGENE
Human Proteome Map RPS2P36 Human Proteome Map
NCBI Gene 100271243 ENTREZGENE