RPL17P49 (ribosomal protein L17 pseudogene 49) - Rat Genome Database

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Gene: RPL17P49 (ribosomal protein L17 pseudogene 49) Homo sapiens
Analyze
Symbol: RPL17P49
Name: ribosomal protein L17 pseudogene 49
RGD ID: 2304765
HGNC Page HGNC:37009
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL17_20_1764
Related Functional Gene: RPL17  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X12,395,821 - 12,396,028 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX12,395,757 - 12,396,167 (-)EnsemblGRCh38hg38GRCh38
GRCh37X12,413,940 - 12,414,147 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X12,413,876 - 12,414,286 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX16,528,068 - 16,528,478 (-)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX10,183,705 - 10,184,115 (-)NCBIHuRef
CHM1_1X12,444,421 - 12,444,831 (-)NCBICHM1_1
T2T-CHM13v2.0X11,978,469 - 11,978,676 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:77
Interacting mature miRNAs:77
Transcripts:ENST00000443728
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 4 1 3 1
Below cutoff 33 29 10 1 16 2 48 22 126 5 23 16 16 28

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000443728
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX12,395,757 - 12,396,167 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL17P49 COSMIC
Ensembl Genes ENSG00000231211 Ensembl
GTEx ENSG00000231211 GTEx
HGNC ID HGNC:37009 ENTREZGENE
Human Proteome Map RPL17P49 Human Proteome Map
NCBI Gene 100271388 ENTREZGENE