RPL23AP55 (ribosomal protein L23a pseudogene 55) - Rat Genome Database

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Gene: RPL23AP55 (ribosomal protein L23a pseudogene 55) Homo sapiens
Analyze
Symbol: RPL23AP55
Name: ribosomal protein L23a pseudogene 55
RGD ID: 2304670
HGNC Page HGNC:35997
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL23A_23_884
Related Functional Gene: RPL23A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38823,206,908 - 23,207,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl823,206,918 - 23,207,369 (+)EnsemblGRCh38hg38GRCh38
GRCh37823,064,421 - 23,064,929 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36823,064,431 - 23,064,882 (+)NCBINCBI36Build 36hg18NCBI36
Celera822,027,029 - 22,027,480 (+)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef821,610,407 - 21,610,858 (+)NCBIHuRef
CHM1_1823,266,549 - 23,267,000 (+)NCBICHM1_1
T2T-CHM13v2.0823,481,793 - 23,482,301 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:105
Interacting mature miRNAs:105
Transcripts:ENST00000498163
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 31
Low 288 109 168 90 286 20 733 98 138 29 217 393 72 277 330
Below cutoff 1138 1084 687 191 486 113 1991 934 870 129 531 727 80 684 1267

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000498163
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl823,206,918 - 23,207,369 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL23AP55 COSMIC
Ensembl Genes ENSG00000243265 Ensembl, ENTREZGENE
GTEx ENSG00000243265 GTEx
HGNC ID HGNC:35997 ENTREZGENE
Human Proteome Map RPL23AP55 Human Proteome Map
NCBI Gene 100271467 ENTREZGENE