RPL29P22 (ribosomal protein L29 pseudogene 22) - Rat Genome Database

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Gene: RPL29P22 (ribosomal protein L29 pseudogene 22) Homo sapiens
Analyze
Symbol: RPL29P22
Name: ribosomal protein L29 pseudogene 22
RGD ID: 2304666
HGNC Page HGNC:35675
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL29_12_1148
Related Functional Gene: RPL29  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381163,115,767 - 63,116,383 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1163,115,880 - 63,116,338 (-)EnsemblGRCh38hg38GRCh38
GRCh371162,883,239 - 62,883,855 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,883,239 - 62,883,855 (-)NCBINCBI36Build 36hg18NCBI36
Celera1160,207,319 - 60,207,935 (-)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1159,212,196 - 59,212,812 (-)NCBIHuRef
CHM1_11162,766,281 - 62,766,897 (-)NCBICHM1_1
T2T-CHM13v2.01163,105,022 - 63,105,638 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:502
Count of miRNA genes:394
Interacting mature miRNAs:434
Transcripts:ENST00000486188, ENST00000498718
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 3 4 1 2 6 6 2 1 3
Below cutoff 178 225 112 30 109 22 453 190 272 48 111 136 9 118 306

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000498718
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1163,115,880 - 63,116,338 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL29P22 COSMIC
Ensembl Genes ENSG00000239924 Ensembl
GTEx ENSG00000239924 GTEx
HGNC ID HGNC:35675 ENTREZGENE
Human Proteome Map RPL29P22 Human Proteome Map
NCBI Gene 100271472 ENTREZGENE