RPL31P59 (ribosomal protein L31 pseudogene 59) - Rat Genome Database

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Gene: RPL31P59 (ribosomal protein L31 pseudogene 59) Homo sapiens
Analyze
Symbol: RPL31P59
Name: ribosomal protein L31 pseudogene 59
RGD ID: 2304659
HGNC Page HGNC:36975
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL31_23_1580
Related Functional Gene: RPL31  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38183,377,935 - 3,378,270 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl183,377,916 - 3,378,247 (-)EnsemblGRCh38hg38GRCh38
GRCh37183,377,933 - 3,378,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36183,377,924 - 3,378,245 (-)NCBINCBI36Build 36hg18NCBI36
Celera183,257,498 - 3,257,819 (-)NCBICelera
Cytogenetic Map18p11.31NCBI
HuRef183,342,608 - 3,342,929 (-)NCBIHuRef
CHM1_1183,377,299 - 3,377,620 (-)NCBICHM1_1
T2T-CHM13v2.0183,537,310 - 3,537,645 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:89
Interacting mature miRNAs:89
Transcripts:ENST00000486139
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1
Low 3 2 2 3 3 1 3 1 4 7 10 1
Below cutoff 26 24 11 7 41 5 48 27 25 10 55 25 2 7 36 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000486139
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl183,377,916 - 3,378,247 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL31P59 COSMIC
Ensembl Genes ENSG00000240364 Ensembl, ENTREZGENE
GTEx ENSG00000240364 GTEx
HGNC ID HGNC:36975 ENTREZGENE
Human Proteome Map RPL31P59 Human Proteome Map
NCBI Gene 100271480 ENTREZGENE