RPL5P27 (ribosomal protein L5 pseudogene 27) - Rat Genome Database

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Gene: RPL5P27 (ribosomal protein L5 pseudogene 27) Homo sapiens
Analyze
Symbol: RPL5P27
Name: ribosomal protein L5 pseudogene 27
RGD ID: 2304613
HGNC Page HGNC:36172
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL5_14_1100
Related Functional Gene: RPL5  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810116,749,864 - 116,751,332 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10116,749,905 - 116,751,261 (+)EnsemblGRCh38hg38GRCh38
GRCh3710118,509,375 - 118,510,843 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610118,493,179 - 118,500,767 (+)NCBINCBI36Build 36hg18NCBI36
Celera10112,238,851 - 112,240,319 (+)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10112,137,593 - 112,139,061 (+)NCBIHuRef
CHM1_110118,792,495 - 118,793,963 (+)NCBICHM1_1
T2T-CHM13v2.010117,644,176 - 117,645,644 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:30
Interacting mature miRNAs:32
Transcripts:ENST00000437011
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 10 4 14 1
Below cutoff 408 377 301 54 121 28 778 312 1259 49 531 246 26 225 494

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000437011
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10116,749,905 - 116,751,261 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL5P27 COSMIC
Ensembl Genes ENSG00000228195 Ensembl
GTEx ENSG00000228195 GTEx
HGNC ID HGNC:36172 ENTREZGENE
Human Proteome Map RPL5P27 Human Proteome Map
NCBI Gene 100129998 ENTREZGENE