RPL36AP29 (ribosomal protein L36a pseudogene 29) - Rat Genome Database

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Gene: RPL36AP29 (ribosomal protein L36a pseudogene 29) Homo sapiens
Analyze
Symbol: RPL36AP29
Name: ribosomal protein L36a pseudogene 29
RGD ID: 2304592
HGNC Page HGNC:36897
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL36A_11_788
Related Functional Gene: RPL36A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38716,208,915 - 16,209,283 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl716,208,945 - 16,209,265 (+)EnsemblGRCh38hg38GRCh38
GRCh37716,248,540 - 16,248,908 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36716,248,573 - 16,248,893 (+)NCBINCBI36Build 36hg18NCBI36
Celera716,228,317 - 16,228,637 (+)NCBICelera
Cytogenetic Map7p21.2NCBI
HuRef716,135,103 - 16,135,423 (+)NCBIHuRef
CHM1_1716,248,286 - 16,248,606 (+)NCBICHM1_1
T2T-CHM13v2.0716,338,680 - 16,339,050 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2716,301,678 - 16,301,998 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:276
Count of miRNA genes:221
Interacting mature miRNAs:227
Transcripts:ENST00000415878
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1
Low 97 49 112 29 53 28 139 46 474 52 303 121 2 21 71 2
Below cutoff 549 565 483 167 180 123 1069 459 1205 128 422 414 44 292 675

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000415878
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl716,208,945 - 16,209,265 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL36AP29 COSMIC
Ensembl Genes ENSG00000224683 Ensembl, ENTREZGENE
GTEx ENSG00000224683 GTEx
HGNC ID HGNC:36897 ENTREZGENE
Human Proteome Map RPL36AP29 Human Proteome Map
NCBI Gene 100271510 ENTREZGENE