RPS13P2 (ribosomal protein S13 pseudogene 2) - Rat Genome Database

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Gene: RPS13P2 (ribosomal protein S13 pseudogene 2) Homo sapiens
Analyze
Symbol: RPS13P2
Name: ribosomal protein S13 pseudogene 2
RGD ID: 2304491
HGNC Page HGNC:36364
Description: INTERACTS WITH chloropicrin; lipopolysaccharide
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS13_1_51
Related Functional Gene: RPS13  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38152,772,150 - 52,772,674 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl152,772,194 - 52,772,648 (-)EnsemblGRCh38hg38GRCh38
GRCh37153,237,822 - 53,238,346 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36153,010,379 - 53,012,401 (-)NCBINCBI36Build 36hg18NCBI36
Celera151,524,587 - 51,525,108 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef151,353,870 - 51,354,391 (-)NCBIHuRef
CHM1_1153,355,182 - 53,355,703 (-)NCBICHM1_1
T2T-CHM13v2.0152,653,679 - 52,654,203 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:18
Interacting mature miRNAs:18
Transcripts:ENST00000437890
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 137 31 104 58 601 62 301 50 105 133 184 291 6 7 28 2
Low 2249 2632 1372 373 1130 212 4044 2007 2786 211 1193 1297 165 1 1194 2749 2 2
Below cutoff 45 309 200 146 199 144 11 132 821 60 79 24 3 3 10 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000437890
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl152,772,194 - 52,772,648 (-)Ensembl
RefSeq Acc Id: XR_015961
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36153,010,379 - 53,012,401 (-)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC RPS13P2 COSMIC
Ensembl Genes ENSG00000228929 Ensembl, ENTREZGENE
GTEx ENSG00000228929 GTEx
HGNC ID HGNC:36364 ENTREZGENE
Human Proteome Map RPS13P2 Human Proteome Map
NCBI Gene 729236 ENTREZGENE