RPS3AP50 (RPS3A pseudogene 50) - Rat Genome Database

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Gene: RPS3AP50 (RPS3A pseudogene 50) Homo sapiens
Analyze
Symbol: RPS3AP50
Name: RPS3A pseudogene 50
RGD ID: 2304472
HGNC Page HGNC:37018
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ribosomal protein S3a pseudogene 50; RPS3A_24_1646
Related Functional Gene: RPS3A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381933,341,203 - 33,341,984 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1933,340,686 - 33,341,984 (+)EnsemblGRCh38hg38GRCh38
GRCh371933,832,109 - 33,832,890 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361933,832,109 - 33,832,890 (+)NCBINCBI36Build 36hg18NCBI36
Celera1930,525,675 - 30,526,456 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1930,332,745 - 30,333,526 (+)NCBIHuRef
CHM1_11933,833,065 - 33,833,846 (+)NCBICHM1_1
T2T-CHM13v2.01935,860,985 - 35,861,770 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:314
Count of miRNA genes:295
Interacting mature miRNAs:309
Transcripts:ENST00000487064
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 2 1 8 2 11 2 1
Below cutoff 123 91 99 30 64 30 227 107 581 24 163 95 55 155

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000487064
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1933,340,686 - 33,341,984 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS3AP50 COSMIC
Ensembl Genes ENSG00000243864 Ensembl
GTEx ENSG00000243864 GTEx
HGNC ID HGNC:37018 ENTREZGENE
Human Proteome Map RPS3AP50 Human Proteome Map
NCBI Gene 100271601 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-22 RPS3AP50  RPS3A pseudogene 50  RPS3AP50  ribosomal protein S3a pseudogene 50  Symbol and/or name change 5135510 APPROVED