RPL36AP41 (ribosomal protein L36a pseudogene 41) - Rat Genome Database

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Gene: RPL36AP41 (ribosomal protein L36a pseudogene 41) Homo sapiens
Analyze
Symbol: RPL36AP41
Name: ribosomal protein L36a pseudogene 41
RGD ID: 2304434
HGNC Page HGNC:35813
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPL36A_17_1248
Related Functional Gene: RPL36A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381263,871,739 - 63,872,044 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1263,871,739 - 63,872,044 (-)EnsemblGRCh38hg38GRCh38
GRCh371264,265,519 - 64,265,824 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361264,265,519 - 64,265,824 (-)NCBINCBI36Build 36hg18NCBI36
Celera1263,930,534 - 63,930,839 (-)NCBICelera
Cytogenetic Map12q14.2NCBI
HuRef1261,317,136 - 61,317,441 (-)NCBIHuRef
CHM1_11264,233,224 - 64,233,529 (-)NCBICHM1_1
T2T-CHM13v2.01263,850,448 - 63,850,753 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

Variants

.
Variants in RPL36AP41
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:59
Interacting mature miRNAs:59
Transcripts:ENST00000493820
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 31 24 17 4 15 1 48 9 39 7 44 36 3 12 34
Below cutoff 586 619 383 89 245 55 921 432 744 74 356 367 35 322 594

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000493820
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1263,871,739 - 63,872,044 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL36AP41 COSMIC
Ensembl Genes ENSG00000242087 Ensembl, ENTREZGENE
GTEx ENSG00000242087 GTEx
HGNC ID HGNC:35813 ENTREZGENE
Human Proteome Map RPL36AP41 Human Proteome Map
NCBI Gene 100271644 ENTREZGENE