RPL13P4 (ribosomal protein L13 pseudogene 4) - Rat Genome Database

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Gene: RPL13P4 (ribosomal protein L13 pseudogene 4) Homo sapiens
Analyze
Symbol: RPL13P4
Name: ribosomal protein L13 pseudogene 4
RGD ID: 2303446
HGNC Page HGNC:31027
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: HsT16723; RPL13_6_1454
Related Functional Gene: RPL13  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381575,388,236 - 75,388,876 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1575,388,267 - 75,388,828 (+)EnsemblGRCh38hg38GRCh38
GRCh371575,680,577 - 75,681,217 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,467,667 - 73,468,222 (+)NCBINCBI36Build 36hg18NCBI36
Celera1552,607,057 - 52,607,697 (+)NCBICelera
Cytogenetic Map15q24.2NCBI
HuRef1552,438,949 - 52,439,589 (+)NCBIHuRef
CHM1_11575,799,168 - 75,799,807 (+)NCBICHM1_1
T2T-CHM13v2.01573,258,328 - 73,258,968 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:154
Count of miRNA genes:153
Interacting mature miRNAs:154
Transcripts:ENST00000484355
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 33 93 66 8 162 9 117 7 55 14 70 110 1 20 60 1
Below cutoff 984 1020 717 219 638 131 1718 579 1071 137 700 779 94 570 982 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000484355
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,388,267 - 75,388,828 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPL13P4 COSMIC
Ensembl Genes ENSG00000241890 Ensembl, ENTREZGENE
GTEx ENSG00000241890 GTEx
HGNC ID HGNC:31027 ENTREZGENE
Human Proteome Map RPL13P4 Human Proteome Map
NCBI Gene 654383 ENTREZGENE
PharmGKB PA142671036 PharmGKB