SPATA31F2P (SPATA31 subfamily F member 2, pseudogene) - Rat Genome Database

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Gene: SPATA31F2P (SPATA31 subfamily F member 2, pseudogene) Homo sapiens
Analyze
No known orthologs.
Symbol: SPATA31F2P
Name: SPATA31 subfamily F member 2, pseudogene
RGD ID: 2302157
HGNC Page HGNC:24504
Description: INTERACTS WITH antirheumatic drug; arsane; arsenic atom
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: C9orf144; C9orf144A; DKFZp434J193; FAM205B; FAM205BP; family with sequence similarity 205 member B, pseudogene
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: SPATA31F1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38934,830,267 - 34,838,586 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl934,832,295 - 34,838,493 (-)EnsemblGRCh38hg38GRCh38
GRCh37934,830,264 - 34,838,583 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36934,821,941 - 34,825,789 (-)NCBINCBI36Build 36hg18NCBI36
Celera934,761,726 - 34,770,045 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef934,785,297 - 34,793,616 (-)NCBIHuRef
CHM1_1934,830,030 - 34,838,346 (-)NCBICHM1_1
T2T-CHM13v2.0934,849,306 - 34,857,624 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:562
Count of miRNA genes:340
Interacting mature miRNAs:355
Transcripts:ENST00000399773, ENST00000455647
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-146416  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37934,834,844 - 34,835,151UniSTSGRCh37
GRCh37934,725,782 - 34,726,089UniSTSGRCh37
Build 36934,715,782 - 34,716,089RGDNCBI36
Celera934,766,306 - 34,766,613UniSTS
Celera934,657,249 - 34,657,556RGD
Cytogenetic Map9p12UniSTS
Cytogenetic Map9p13.2UniSTS
HuRef934,789,877 - 34,790,184UniSTS
HuRef934,680,030 - 34,680,337UniSTS
TNG Radiation Hybrid Map918549.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 195
Low 1 1 2 2 172 2 2
Below cutoff 1200 1367 683 154 311 63 2450 1030 1561 45 467 701 92 751 1635

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000378786
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl934,837,442 - 34,838,497 (-)Ensembl
RefSeq Acc Id: ENST00000399773
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl934,832,295 - 34,838,493 (-)Ensembl
RefSeq Acc Id: ENST00000455647
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl934,832,645 - 34,838,586 (-)Ensembl
RefSeq Acc Id: NR_024481
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38934,830,267 - 34,838,586 (-)NCBI
GRCh37934,830,264 - 34,838,583 (-)RGD
Celera934,761,726 - 34,770,045 (-)RGD
HuRef934,785,297 - 34,793,616 (-)ENTREZGENE
CHM1_1934,830,030 - 34,838,346 (-)NCBI
T2T-CHM13v2.0934,849,306 - 34,857,624 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAC87313 (Get FASTA)   NCBI Sequence Viewer  
  CAH56187 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63HN1-F1-model_v2 AlphaFold Q63HN1 1-556 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24504 AgrOrtholog
COSMIC SPATA31F2P COSMIC
Ensembl Genes ENSG00000257198 Ensembl
GTEx ENSG00000257198 GTEx
HGNC ID HGNC:24504 ENTREZGENE
Human Proteome Map SPATA31F2P Human Proteome Map
InterPro SPATA31/FAM205 UniProtKB/Swiss-Prot
NCBI Gene 389715 ENTREZGENE
PANTHER ACROSOME-SPECIFIC PROTEIN UniProtKB/Swiss-Prot
  PROTEIN FAM205A-RELATED UniProtKB/Swiss-Prot
Pfam FAM75 UniProtKB/Swiss-Prot
UniProt F205B_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q6ZRJ7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-01-23 SPATA31F2P  SPATA31 subfamily F member 2, pseudogene  FAM205BP  family with sequence similarity 205 member B, pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2015-11-24 FAM205BP  family with sequence similarity 205 member B, pseudogene    family with sequence similarity 205, member B, pseudogene  Symbol and/or name change 5135510 APPROVED
2014-10-15 FAM205BP  family with sequence similarity 205, member B, pseudogene  FAM205B  family with sequence similarity 205, member B  Symbol and/or name change 5135510 APPROVED
2011-09-01 FAM205B  family with sequence similarity 205, member B  C9orf144  chromosome 9 open reading frame 144  Symbol and/or name change 5135510 APPROVED