Gm3978 (predicted gene 3978) - Rat Genome Database

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Gene: Gm3978 (predicted gene 3978) Mus musculus
Analyze
Symbol: Gm3978
Name: predicted gene 3978
RGD ID: 2301646
MGI Page MGI
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 100042703
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3977,951,287 - 7,964,571 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl77,951,361 - 7,967,377 (-)EnsemblGRCm39 Ensembl
GRCm3877,948,288 - 7,961,572 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl77,948,362 - 7,964,378 (-)EnsemblGRCm38mm10GRCm38
MGSCv3778,498,162 - 8,511,446 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3678,495,356 - 8,511,446 (+)NCBIMGSCv36mm8
Cytogenetic Map7A1NCBI
cM Map74.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm3978
73 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:24
Interacting mature miRNAs:24
Transcripts:ENSMUST00000163406
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000163406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl77,951,361 - 7,967,377 (-)Ensembl
GRCm38.p6 Ensembl77,948,362 - 7,964,378 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090968 Ensembl, ENTREZGENE
MGD MGI:3782151 ENTREZGENE
NCBI Gene 100042703 ENTREZGENE
PhenoGen Gm3978 PhenoGen