Rpl21-ps15 (ribosomal protein L21, pseudogene 15) - Rat Genome Database

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Gene: Rpl21-ps15 (ribosomal protein L21, pseudogene 15) Mus musculus
Analyze
Symbol: Rpl21-ps15
Name: ribosomal protein L21, pseudogene 15
RGD ID: 2295265
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ENSMUSG00000072901; Gm15150
Related Functional Gene: Rpl21  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X149,998,130 - 149,998,684 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX149,998,163 - 149,998,645 (-)EnsemblGRCm39 Ensembl
GRCm38X151,215,134 - 151,215,688 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX151,215,167 - 151,215,649 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X147,649,563 - 147,663,187 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X147,649,664 - 147,663,088 (-)NCBIMGSCv36mm8
CeleraX133,173,952 - 133,187,579 (+)NCBICelera
Cytogenetic MapXF3NCBI
cM MapX68.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12040188  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:216
Count of miRNA genes:135
Interacting mature miRNAs:140
Transcripts:ENSMUST00000121545, ENSMUST00000169443
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
10412164Cmv2_mcytomegalovirus resistance 2 (mouse)Not determinedX125685149159685269Mouse
13824981Svwq2_mseminal vesicle weight QTL 2 (mouse)X128900749153782996Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
1301276Tswt_mtestis weight (mouse)Not determinedX138376411150789338Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000121545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX149,998,163 - 149,998,645 (-)Ensembl
GRCm38.p6 EnsemblX151,215,167 - 151,215,649 (-)Ensembl
Protein Sequences
GenBank Protein EDL07492 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000083596 Ensembl, ENTREZGENE
MGD MGI:3705426 ENTREZGENE
NCBI Gene 675278 ENTREZGENE
PhenoGen Rpl21-ps15 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rpl21-ps15  ribosomal protein L21, pseudogene 15  Gm15150  predicted gene 15150  Symbol and/or name change 5135510 APPROVED