Gm10288 (predicted gene 10288) - Rat Genome Database

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Gene: Gm10288 (predicted gene 10288) Mus musculus
Analyze
Symbol: Gm10288
Name: predicted gene 10288
RGD ID: 2294790
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ENSMUSG00000070343; hypothetical protein LOC100040540
Related Functional Gene: Rpl11  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393146,544,530 - 146,545,120 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3146,544,566 - 146,545,102 (-)EnsemblGRCm39 Ensembl
GRCm383146,838,775 - 146,839,365 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3146,838,811 - 146,839,347 (-)EnsemblGRCm38mm10GRCm38
MGSCv373146,501,716 - 146,502,320 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363146,501,696 - 146,502,335 (-)NCBIMGSCv36mm8
Celera3153,291,754 - 153,292,359 (-)NCBICelera
Cytogenetic Map3H2NCBI
cM Map372.28NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm10288
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:52
Interacting mature miRNAs:52
Transcripts:ENSMUST00000084614
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
4142245Pstc1_mperiosteal circumference 1 (mouse)Not determined3126270248159745316Mouse
1301218Letohc1_mlow ethanol consumption 1 (mouse)Not determined3126352986159745316Mouse
1301347Fpli_mfasting plasma insulin (mouse)Not determined3126460514159745316Mouse
1301563Alcp3_malcohol preference locus 3 (mouse)Not determined3130736935159745316Mouse
11039523Tbbr1_mTrypanosoma brucei brucei response 1 (mouse)3130849375159745316Mouse
1300753Eae10_msusceptibility to experimental allergic encephalomyelitis 10 (mouse)Not determined3131736617148451178Mouse
1301528Loco1_mlocomotor activity 1 (mouse)Not determined3133461893159745316Mouse
1301221Hrtfm2_mheart failure modifier 2 (mouse)Not determined3143270248147045722Mouse
1301222Scc7_mcolon tumor susceptibility 7 (mouse)Not determined3143352986156364108Mouse
25394566Skmw51_mskeletal muscle weight 51, gastroc (mouse)3146006623150688104Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000084614
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3146,544,566 - 146,545,102 (-)Ensembl
GRCm38.p6 Ensembl3146,838,811 - 146,839,347 (-)Ensembl
RefSeq Acc Id: XM_001475408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv373146,501,716 - 146,502,320 (-)RGD
RefSeq Acc Id: XM_003086339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera3153,291,754 - 153,292,359 (-)RGD
Protein Sequences
GenBank Protein EDL11957 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3704227 AgrOrtholog
Ensembl Genes ENSMUSG00000070343 Ensembl, ENTREZGENE
MGD MGI:3704227 ENTREZGENE
NCBI Gene 100040540 ENTREZGENE
PhenoGen Gm10288 PhenoGen