Gm7099 (predicted gene 7099) - Rat Genome Database

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Gene: Gm7099 (predicted gene 7099) Mus musculus
Analyze
Symbol: Gm7099
Name: predicted gene 7099
RGD ID: 2294348
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG633030
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39129,479,512 - 9,480,525 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl129,479,547 - 9,480,100 (+)EnsemblGRCm39 Ensembl
GRCm38129,429,520 - 9,430,271 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl129,429,547 - 9,430,100 (+)EnsemblGRCm38mm10GRCm38
MGSCv37129,436,352 - 9,436,905 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36129,455,554 - 9,456,526 (+)NCBIMGSCv36mm8
Celera129,816,449 - 9,817,002 (+)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map124.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm7099
21 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:149
Count of miRNA genes:147
Interacting mature miRNAs:149
Transcripts:ENSMUST00000080066
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
25394547Skmw75_mskeletal muscle weight 75, gastroc (mouse)12821257610451853Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_381242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000080066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl129,479,547 - 9,480,100 (+)Ensembl
GRCm38.p6 Ensembl129,429,547 - 9,430,100 (+)Ensembl
RefSeq Acc Id: XR_381242
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39129,479,512 - 9,480,525 (+)NCBI
GRCm38129,429,520 - 9,430,271 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000060647 Ensembl
MGD MGI:3646387 ENTREZGENE
NCBI Gene 633030 ENTREZGENE
PhenoGen Gm7099 PhenoGen