Gm11675 (predicted gene 11675) - Rat Genome Database

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Gene: Gm11675 (predicted gene 11675) Mus musculus
Analyze
Symbol: Gm11675
Name: predicted gene 11675
RGD ID: 2294031
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Eef1d  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911111,166,859 - 111,167,820 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11111,166,926 - 111,167,757 (+)EnsemblGRCm39 Ensembl
GRCm3811111,276,033 - 111,276,994 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11111,276,100 - 111,276,931 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711111,137,387 - 111,138,242 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611111,092,135 - 111,093,094 (+)NCBIMGSCv36mm8
Celera11123,026,437 - 123,027,292 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1175.23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm11675
39 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:40
Interacting mature miRNAs:40
Transcripts:ENSMUST00000121873
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
14700693Ppiq12_mprepulse inhibition QTL 12 (mouse)11101504820114472363Mouse
14700694Ppiq13_mprepulse inhibition QTL 13 (mouse)11101504820114472363Mouse
14700695Ppiq14_mprepulse inhibition QTL 14 (mouse)11101504820114472363Mouse
14700696Ppiq15_mprepulse inhibition QTL 15 (mouse)11101504820114472363Mouse
1300957Pbd1_mpeak bone density 1 (mouse)Not determined11102344123112384123Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103273992115021444Mouse
25394548Skmw74_mskeletal muscle weight 74, EDL (mouse)11111035546111702206Mouse

Markers in Region
AA589397  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811111,276,266 - 111,276,484UniSTSGRCm38
GRCm384115,652,804 - 115,653,035UniSTSGRCm38
MGSCv374115,325,409 - 115,325,640UniSTSGRCm37
MGSCv3711111,137,580 - 111,137,798UniSTSGRCm37
Celera11123,026,630 - 123,026,848UniSTS
Celera4114,388,818 - 114,389,049UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map4D1UniSTS
Whitehead/MRC_RH111493.8UniSTS
RH129024  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811111,276,831 - 111,276,980UniSTSGRCm38
GRCm381575,895,504 - 75,895,793UniSTSGRCm38
MGSCv3711111,138,145 - 111,138,294UniSTSGRCm37
MGSCv371575,725,934 - 75,726,223UniSTSGRCm37
Celera11123,027,195 - 123,027,344UniSTS
Celera1577,396,484 - 77,396,773UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map15E1UniSTS
RH125453  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811111,276,080 - 111,276,203UniSTSGRCm38
MGSCv3711111,137,394 - 111,137,517UniSTSGRCm37
Celera11123,026,444 - 123,026,567UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map11E2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_020440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL645928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000121873
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11111,166,926 - 111,167,757 (+)Ensembl
GRCm38.p6 Ensembl11111,276,100 - 111,276,931 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082272 Ensembl, ENTREZGENE
MGD MGI:3650970 ENTREZGENE
NCBI Gene 667003 ENTREZGENE
PhenoGen Gm11675 PhenoGen