Gm6023 (predicted gene 6023) - Rat Genome Database

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Gene: Gm6023 (predicted gene 6023) Mus musculus
Analyze
Symbol: Gm6023
Name: predicted gene 6023
RGD ID: 2293963
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG547166
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X35,477,177 - 35,477,788 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX35,477,177 - 35,477,782 (-)EnsemblGRCm39 Ensembl
GRCm38X36,213,524 - 36,214,135 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX36,213,524 - 36,214,129 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X33,753,519 - 33,754,130 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X32,644,950 - 32,645,580 (-)NCBIMGSCv36mm8
CeleraX22,942,272 - 22,942,883 (-)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX20.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12520002  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:74
Interacting mature miRNAs:74
Transcripts:ENSMUST00000118217
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000118217
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX35,477,177 - 35,477,782 (-)Ensembl
GRCm38.p6 EnsemblX36,213,524 - 36,214,129 (-)Ensembl
RefSeq Acc Id: XR_141396
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X36,213,524 - 36,214,135 (-)ENTREZGENE
cM MapX ENTREZGENE
RefSeq Acc Id: XR_142396
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
CeleraX22,942,272 - 22,942,883 (-)RGD

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000081159 Ensembl, ENTREZGENE
MGD MGI:3645815 ENTREZGENE
NCBI Gene 547166 ENTREZGENE
PhenoGen Gm6023 PhenoGen