FHIP1A (FHF complex subunit HOOK interacting protein 1A) - Rat Genome Database

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Gene: FHIP1A (FHF complex subunit HOOK interacting protein 1A) Homo sapiens
Analyze
Symbol: FHIP1A
Name: FHF complex subunit HOOK interacting protein 1A
RGD ID: 2293812
HGNC Page HGNC:34237
Description: Involved in protein localization to perinuclear region of cytoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FAM160A1; family with sequence similarity 160 member A1; family with sequence similarity 160, member A1; FHF complex subunit HOOK-interacting protein 1A; FHIP-L; FLJ43373; FTS and Hook-interacting protein like; hypothetical protein LOC729830
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384151,409,176 - 151,670,503 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4151,409,176 - 151,670,503 (+)EnsemblGRCh38hg38GRCh38
GRCh374152,330,328 - 152,591,655 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364152,623,211 - 152,803,356 (+)NCBINCBI36Build 36hg18NCBI36
Celera4149,654,831 - 149,908,687 (+)NCBICelera
Cytogenetic Map4q31.3NCBI
HuRef4148,055,337 - 148,310,292 (+)NCBIHuRef
CHM1_14152,307,963 - 152,562,804 (+)NCBICHM1_1
T2T-CHM13v2.04154,733,031 - 154,993,605 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (HEP)
High Myopia  (IAGP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
High myopia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
Additional References at PubMed
PMID:8889549   PMID:10737800   PMID:12477932   PMID:16344560   PMID:20379614   PMID:26186194   PMID:28514442   PMID:28718761   PMID:29395067   PMID:29467281   PMID:29507755   PMID:29930801  
PMID:30420729   PMID:31527615   PMID:32073997   PMID:33961781   PMID:34079125   PMID:34882091   PMID:35044719   PMID:37689310   PMID:37827155  


Genomics

Comparative Map Data
FHIP1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384151,409,176 - 151,670,503 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4151,409,176 - 151,670,503 (+)EnsemblGRCh38hg38GRCh38
GRCh374152,330,328 - 152,591,655 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364152,623,211 - 152,803,356 (+)NCBINCBI36Build 36hg18NCBI36
Celera4149,654,831 - 149,908,687 (+)NCBICelera
Cytogenetic Map4q31.3NCBI
HuRef4148,055,337 - 148,310,292 (+)NCBIHuRef
CHM1_14152,307,963 - 152,562,804 (+)NCBICHM1_1
T2T-CHM13v2.04154,733,031 - 154,993,605 (+)NCBIT2T-CHM13v2.0
Fhip1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39385,567,370 - 85,653,516 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl385,567,368 - 85,724,598 (-)EnsemblGRCm39 Ensembl
GRCm38385,660,063 - 85,785,302 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl385,660,061 - 85,817,291 (-)EnsemblGRCm38mm10GRCm38
MGSCv37385,463,985 - 85,550,131 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36385,745,993 - 85,808,435 (-)NCBIMGSCv36mm8
Celera385,681,134 - 85,769,538 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map337.83NCBI
Fhip1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82173,319,252 - 173,489,514 (-)NCBIGRCr8
mRatBN7.22171,016,951 - 171,265,715 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2171,021,246 - 171,265,848 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2178,171,989 - 178,241,117 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02176,191,925 - 176,261,053 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02170,793,459 - 170,862,609 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02184,684,851 - 184,993,350 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2184,941,700 - 185,168,773 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02204,082,397 - 204,087,493 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02204,332,904 - 204,386,515 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42177,632,481 - 177,641,802 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2165,000,309 - 165,065,248 (-)NCBICelera
Cytogenetic Map2q34NCBI
Fhip1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554716,051,733 - 6,222,896 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554715,985,150 - 6,229,720 (+)NCBIChiLan1.0ChiLan1.0
FHIP1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23149,291,711 - 149,550,493 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14149,648,805 - 149,907,577 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04143,746,238 - 144,004,988 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14155,399,009 - 155,657,450 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4155,553,163 - 155,649,725 (+)Ensemblpanpan1.1panPan2
FHIP1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11549,373,596 - 49,603,177 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1549,373,465 - 49,596,556 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1549,717,302 - 49,950,784 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01550,050,169 - 50,279,755 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1550,050,190 - 50,278,683 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11549,312,332 - 49,551,637 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01549,419,297 - 49,653,031 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01549,731,061 - 49,963,660 (+)NCBIUU_Cfam_GSD_1.0
Fhip1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530140,886,253 - 41,122,492 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366891,408,748 - 1,640,049 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366891,408,755 - 1,646,271 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FHIP1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl877,328,621 - 77,602,069 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1877,328,626 - 77,628,111 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2881,905,052 - 81,912,993 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FHIP1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1797,980,815 - 98,239,844 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl798,142,435 - 98,237,603 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603777,592,671 - 77,857,405 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fhip1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248582,937,444 - 3,118,350 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248582,860,489 - 3,116,021 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FHIP1A
48 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 4q26-35.2(chr4:118065569-190042639)x3 copy number gain See cases [RCV000051785] Chr4:118065569..190042639 [GRCh38]
Chr4:118986724..190828225 [GRCh37]
Chr4:119206172..191200788 [NCBI36]
Chr4:4q26-35.2		 pathogenic
GRCh38/hg38 4q27-35.2(chr4:121518223-190062270)x3 copy number gain See cases [RCV000051786] Chr4:121518223..190062270 [GRCh38]
Chr4:122439378..190828225 [GRCh37]
Chr4:122658828..191220419 [NCBI36]
Chr4:4q27-35.2		 pathogenic
GRCh38/hg38 4q31.21-31.3(chr4:140876253-152186578)x3 copy number gain See cases [RCV000051787] Chr4:140876253..152186578 [GRCh38]
Chr4:141797407..153107730 [GRCh37]
Chr4:142016857..153327180 [NCBI36]
Chr4:4q31.21-31.3		 pathogenic
GRCh38/hg38 4q31.22-34.1(chr4:147317283-173675559)x3 copy number gain See cases [RCV000051788] Chr4:147317283..173675559 [GRCh38]
Chr4:148238435..174596710 [GRCh37]
Chr4:148457885..174833285 [NCBI36]
Chr4:4q31.22-34.1		 pathogenic
GRCh38/hg38 4q31.23-35.2(chr4:148356485-189548183)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051789]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051789]|See cases [RCV000051789] Chr4:148356485..189548183 [GRCh38]
Chr4:149277637..190469337 [GRCh37]
Chr4:149497087..190706331 [NCBI36]
Chr4:4q31.23-35.2		 pathogenic
GRCh38/hg38 4q22.2-32.3(chr4:92913386-165299707)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|See cases [RCV000051775] Chr4:92913386..165299707 [GRCh38]
Chr4:93834537..166220859 [GRCh37]
Chr4:94053560..166440309 [NCBI36]
Chr4:4q22.2-32.3		 pathogenic
GRCh38/hg38 4q31.21-35.2(chr4:145042668-189975519)x3 copy number gain See cases [RCV000135845] Chr4:145042668..189975519 [GRCh38]
Chr4:145963820..190828225 [GRCh37]
Chr4:146183270..191133668 [NCBI36]
Chr4:4q31.21-35.2		 pathogenic
GRCh38/hg38 4q31.3-32.1(chr4:151299810-160314050)x1 copy number loss See cases [RCV000135696] Chr4:151299810..160314050 [GRCh38]
Chr4:152220962..161235202 [GRCh37]
Chr4:152440412..161454652 [NCBI36]
Chr4:4q31.3-32.1		 likely pathogenic
GRCh38/hg38 4q31.1-35.2(chr4:138510532-189963195)x3 copy number gain See cases [RCV000136810] Chr4:138510532..189963195 [GRCh38]
Chr4:139431686..190828225 [GRCh37]
Chr4:139651136..191121344 [NCBI36]
Chr4:4q31.1-35.2		 pathogenic
GRCh38/hg38 4q28.3-35.2(chr4:131985253-190095391)x3 copy number gain See cases [RCV000137721] Chr4:131985253..190095391 [GRCh38]
Chr4:132906408..190828225 [GRCh37]
Chr4:133125858..191250527 [NCBI36]
Chr4:4q28.3-35.2		 pathogenic|likely benign
GRCh38/hg38 4q28.1-35.1(chr4:125432943-185761887)x3 copy number gain See cases [RCV000138578] Chr4:125432943..185761887 [GRCh38]
Chr4:126354098..186683041 [GRCh37]
Chr4:126573548..186920035 [NCBI36]
Chr4:4q28.1-35.1		 pathogenic|likely benign
GRCh38/hg38 4q31.3(chr4:151144531-151643648)x1 copy number loss See cases [RCV000141752] Chr4:151144531..151643648 [GRCh38]
Chr4:152065683..152564800 [GRCh37]
Chr4:152285133..152784250 [NCBI36]
Chr4:4q31.3		 likely benign|uncertain significance
GRCh38/hg38 4q28.3-35.2(chr4:134935616-190036318)x3 copy number gain See cases [RCV000143559] Chr4:134935616..190036318 [GRCh38]
Chr4:135856771..190957473 [GRCh37]
Chr4:136076221..191194467 [NCBI36]
Chr4:4q28.3-35.2		 pathogenic
GRCh37/hg19 4q28.3-35.1(chr4:136912336-184253252)x3 copy number gain See cases [RCV000240245] Chr4:136912336..184253252 [GRCh37]
Chr4:4q28.3-35.1		 pathogenic
GRCh37/hg19 4q26-35.2(chr4:119437495-190904301)x3 copy number gain See cases [RCV000240392] Chr4:119437495..190904301 [GRCh37]
Chr4:4q26-35.2		 pathogenic
NM_001109977.3(FHIP1A):c.1844A>G (p.Lys615Arg) single nucleotide variant not specified [RCV004291577] Chr4:151649885 [GRCh38]
Chr4:152571037 [GRCh37]
Chr4:4q31.3		 uncertain significance
GRCh37/hg19 4p16.3-q35.2(chr4:12440-190904441)x3 copy number gain See cases [RCV000446653] Chr4:12440..190904441 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473) copy number gain See cases [RCV000510453] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4q25-35.2(chr4:109199664-189752726)x3 copy number gain See cases [RCV000511945] Chr4:109199664..189752726 [GRCh37]
Chr4:4q25-35.2		 pathogenic
GRCh37/hg19 4q22.1-35.2(chr4:93071152-190957473)x3 copy number gain See cases [RCV000510970] Chr4:93071152..190957473 [GRCh37]
Chr4:4q22.1-35.2		 pathogenic
NM_001109977.3(FHIP1A):c.2980C>T (p.Pro994Ser) single nucleotide variant not specified [RCV004314008] Chr4:151662611 [GRCh38]
Chr4:152583763 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.644C>T (p.Ala215Val) single nucleotide variant not specified [RCV004309550] Chr4:151577988 [GRCh38]
Chr4:152499140 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.757C>G (p.Leu253Val) single nucleotide variant not specified [RCV004301394] Chr4:151586665 [GRCh38]
Chr4:152507817 [GRCh37]
Chr4:4q31.3		 uncertain significance
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473)x3 copy number gain See cases [RCV000512241] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4q31.3(chr4:151948130-152446550)x3 copy number gain not provided [RCV000682469] Chr4:151948130..152446550 [GRCh37]
Chr4:4q31.3		 likely benign
GRCh37/hg19 4q31.3(chr4:152404272-152497264)x1 copy number loss not provided [RCV000682470] Chr4:152404272..152497264 [GRCh37]
Chr4:4q31.3		 likely benign
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190915650)x3 copy number gain not provided [RCV000743155] Chr4:49450..190915650 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190963766)x3 copy number gain not provided [RCV000743156] Chr4:49450..190963766 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:11525-191028879)x3 copy number gain not provided [RCV000743147] Chr4:11525..191028879 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
NM_001109977.3(FHIP1A):c.2230G>A (p.Ala744Thr) single nucleotide variant not specified [RCV004288517] Chr4:151650271 [GRCh38]
Chr4:152571423 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2694C>T (p.Asn898=) single nucleotide variant not provided [RCV000949278] Chr4:151656374 [GRCh38]
Chr4:152577526 [GRCh37]
Chr4:4q31.3		 benign
GRCh37/hg19 4q31.3(chr4:152404272-152599721)x1 copy number loss not provided [RCV001005605] Chr4:152404272..152599721 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2417A>G (p.Asp806Gly) single nucleotide variant High myopia [RCV000785691] Chr4:151650458 [GRCh38]
Chr4:152571610 [GRCh37]
Chr4:4q31.3		 uncertain significance
GRCh37/hg19 4q28.1-35.1(chr4:124873497-185278662)x3 copy number gain not provided [RCV000849686] Chr4:124873497..185278662 [GRCh37]
Chr4:4q28.1-35.1		 pathogenic
GRCh37/hg19 4q31.3-35.2(chr4:151174061-190957473)x3 copy number gain not provided [RCV000849098] Chr4:151174061..190957473 [GRCh37]
Chr4:4q31.3-35.2		 pathogenic
NM_001109977.3(FHIP1A):c.1567G>A (p.Ala523Thr) single nucleotide variant not specified [RCV004298915] Chr4:151649608 [GRCh38]
Chr4:152570760 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2438C>T (p.Ser813Phe) single nucleotide variant not specified [RCV004319319] Chr4:151650479 [GRCh38]
Chr4:152571631 [GRCh37]
Chr4:4q31.3		 uncertain significance
GRCh37/hg19 4q28.3-32.3(chr4:131303317-168722402)x3 copy number gain not provided [RCV001537926] Chr4:131303317..168722402 [GRCh37]
Chr4:4q28.3-32.3		 pathogenic
NM_001109977.3(FHIP1A):c.2057G>C (p.Ser686Thr) single nucleotide variant not specified [RCV004326958] Chr4:151650098 [GRCh38]
Chr4:152571250 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.3050T>A (p.Leu1017Gln) single nucleotide variant not specified [RCV004332635] Chr4:151662681 [GRCh38]
Chr4:152583833 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1021C>T (p.Leu341Phe) single nucleotide variant not specified [RCV004328856] Chr4:151629744 [GRCh38]
Chr4:152550896 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.3011T>C (p.Met1004Thr) single nucleotide variant not specified [RCV004323658] Chr4:151662642 [GRCh38]
Chr4:152583794 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1619C>T (p.Thr540Met) single nucleotide variant not specified [RCV004295474] Chr4:151649660 [GRCh38]
Chr4:152570812 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.260C>T (p.Pro87Leu) single nucleotide variant not specified [RCV004260360] Chr4:151577604 [GRCh38]
Chr4:152498756 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2060C>T (p.Thr687Ile) single nucleotide variant not specified [RCV004276376] Chr4:151650101 [GRCh38]
Chr4:152571253 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.106G>A (p.Val36Ile) single nucleotide variant not specified [RCV004249888] Chr4:151577450 [GRCh38]
Chr4:152498602 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1784C>T (p.Ser595Phe) single nucleotide variant not specified [RCV004270564] Chr4:151649825 [GRCh38]
Chr4:152570977 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1031G>A (p.Arg344His) single nucleotide variant not specified [RCV004253772] Chr4:151629754 [GRCh38]
Chr4:152550906 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.714G>C (p.Glu238Asp) single nucleotide variant not specified [RCV004252303] Chr4:151578058 [GRCh38]
Chr4:152499210 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1121C>T (p.Thr374Met) single nucleotide variant not specified [RCV004278827] Chr4:151629844 [GRCh38]
Chr4:152550996 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2139G>C (p.Lys713Asn) single nucleotide variant not specified [RCV004266713] Chr4:151650180 [GRCh38]
Chr4:152571332 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.844C>A (p.Leu282Ile) single nucleotide variant not specified [RCV004255545] Chr4:151586752 [GRCh38]
Chr4:152507904 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.547T>C (p.Phe183Leu) single nucleotide variant not specified [RCV004252658] Chr4:151577891 [GRCh38]
Chr4:152499043 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.829C>G (p.Leu277Val) single nucleotide variant not specified [RCV004323242] Chr4:151586737 [GRCh38]
Chr4:152507889 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.190G>A (p.Val64Met) single nucleotide variant not specified [RCV004325307] Chr4:151577534 [GRCh38]
Chr4:152498686 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1114A>G (p.Thr372Ala) single nucleotide variant not specified [RCV004327859] Chr4:151629837 [GRCh38]
Chr4:152550989 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2384A>G (p.Glu795Gly) single nucleotide variant not specified [RCV004312382] Chr4:151650425 [GRCh38]
Chr4:152571577 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.3007C>G (p.Pro1003Ala) single nucleotide variant not specified [RCV004342313] Chr4:151662638 [GRCh38]
Chr4:152583790 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1538G>A (p.Arg513His) single nucleotide variant not specified [RCV004343718] Chr4:151649579 [GRCh38]
Chr4:152570731 [GRCh37]
Chr4:4q31.3		 likely benign
NM_001109977.3(FHIP1A):c.2566G>A (p.Val856Ile) single nucleotide variant not specified [RCV004342118] Chr4:151656246 [GRCh38]
Chr4:152577398 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2231C>T (p.Ala744Val) single nucleotide variant not specified [RCV004341413] Chr4:151650272 [GRCh38]
Chr4:152571424 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.838C>T (p.Pro280Ser) single nucleotide variant not specified [RCV004355909] Chr4:151586746 [GRCh38]
Chr4:152507898 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1453G>A (p.Glu485Lys) single nucleotide variant not specified [RCV004354054] Chr4:151649494 [GRCh38]
Chr4:152570646 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.709G>A (p.Val237Met) single nucleotide variant not specified [RCV004345722] Chr4:151578053 [GRCh38]
Chr4:152499205 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1610A>G (p.Gln537Arg) single nucleotide variant not specified [RCV004362514] Chr4:151649651 [GRCh38]
Chr4:152570803 [GRCh37]
Chr4:4q31.3		 uncertain significance
GRCh37/hg19 4q31.3(chr4:152578956-152939694)x3 copy number gain not provided [RCV003484208] Chr4:152578956..152939694 [GRCh37]
Chr4:4q31.3		 uncertain significance
GRCh37/hg19 4q26-32.3(chr4:117518683-168174703)x3 copy number gain not provided [RCV003484198] Chr4:117518683..168174703 [GRCh37]
Chr4:4q26-32.3		 pathogenic
NM_001109977.3(FHIP1A):c.12G>A (p.Ser4=) single nucleotide variant not provided [RCV003439512] Chr4:151566271 [GRCh38]
Chr4:152487423 [GRCh37]
Chr4:4q31.3		 likely benign
NM_001109977.3(FHIP1A):c.1284A>G (p.Arg428=) single nucleotide variant not provided [RCV003439513] Chr4:151646615 [GRCh38]
Chr4:152567767 [GRCh37]
Chr4:4q31.3		 likely benign
GRCh37/hg19 4q27-35.2(chr4:123399154-190957473)x3 copy number gain not specified [RCV003986533] Chr4:123399154..190957473 [GRCh37]
Chr4:4q27-35.2		 pathogenic
GRCh37/hg19 4q24-35.2(chr4:101203509-190957473)x3 copy number gain not specified [RCV003986496] Chr4:101203509..190957473 [GRCh37]
Chr4:4q24-35.2		 pathogenic
GRCh37/hg19 4p12-q35.2(chr4:45455621-191003541)x3 copy number gain not provided [RCV003885507] Chr4:45455621..191003541 [GRCh37]
Chr4:4p12-q35.2		 pathogenic
NM_001109977.3(FHIP1A):c.1833T>G (p.Ile611Met) single nucleotide variant not specified [RCV004394274] Chr4:151649874 [GRCh38]
Chr4:152571026 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1837C>T (p.Pro613Ser) single nucleotide variant not specified [RCV004394275] Chr4:151649878 [GRCh38]
Chr4:152571030 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.227T>C (p.Ile76Thr) single nucleotide variant not specified [RCV004394281] Chr4:151577571 [GRCh38]
Chr4:152498723 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2564G>T (p.Ser855Ile) single nucleotide variant not specified [RCV004394287] Chr4:151656244 [GRCh38]
Chr4:152577396 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.718A>G (p.Thr240Ala) single nucleotide variant not specified [RCV004394306] Chr4:151578062 [GRCh38]
Chr4:152499214 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1042G>A (p.Glu348Lys) single nucleotide variant not specified [RCV004394258] Chr4:151629765 [GRCh38]
Chr4:152550917 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1172T>A (p.Phe391Tyr) single nucleotide variant not specified [RCV004394262] Chr4:151638702 [GRCh38]
Chr4:152559854 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1504C>A (p.Gln502Lys) single nucleotide variant not specified [RCV004394266] Chr4:151649545 [GRCh38]
Chr4:152570697 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1556G>A (p.Arg519His) single nucleotide variant not specified [RCV004394267] Chr4:151649597 [GRCh38]
Chr4:152570749 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1619C>G (p.Thr540Arg) single nucleotide variant not specified [RCV004394269] Chr4:151649660 [GRCh38]
Chr4:152570812 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1640C>T (p.Ser547Leu) single nucleotide variant not specified [RCV004394271] Chr4:151649681 [GRCh38]
Chr4:152570833 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1967T>A (p.Met656Lys) single nucleotide variant not specified [RCV004394276] Chr4:151650008 [GRCh38]
Chr4:152571160 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2743G>A (p.Val915Met) single nucleotide variant not specified [RCV004394292] Chr4:151656772 [GRCh38]
Chr4:152577924 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.280T>G (p.Ser94Ala) single nucleotide variant not specified [RCV004394293] Chr4:151577624 [GRCh38]
Chr4:152498776 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.353A>C (p.Gln118Pro) single nucleotide variant not specified [RCV004394298] Chr4:151577697 [GRCh38]
Chr4:152498849 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.608C>T (p.Pro203Leu) single nucleotide variant not specified [RCV004394304] Chr4:151577952 [GRCh38]
Chr4:152499104 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.728G>A (p.Cys243Tyr) single nucleotide variant not specified [RCV004394307] Chr4:151578072 [GRCh38]
Chr4:152499224 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.863C>T (p.Ser288Phe) single nucleotide variant not specified [RCV004394309] Chr4:151586771 [GRCh38]
Chr4:152507923 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1602G>A (p.Met534Ile) single nucleotide variant not specified [RCV004394268] Chr4:151649643 [GRCh38]
Chr4:152570795 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2203G>T (p.Ala735Ser) single nucleotide variant not specified [RCV004394278] Chr4:151650244 [GRCh38]
Chr4:152571396 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2283G>C (p.Glu761Asp) single nucleotide variant not specified [RCV004394282] Chr4:151650324 [GRCh38]
Chr4:152571476 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2629G>A (p.Gly877Arg) single nucleotide variant not specified [RCV004394288] Chr4:151656309 [GRCh38]
Chr4:152577461 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2675C>T (p.Ser892Phe) single nucleotide variant not specified [RCV004394289] Chr4:151656355 [GRCh38]
Chr4:152577507 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.410A>G (p.Lys137Arg) single nucleotide variant not specified [RCV004394302] Chr4:151577754 [GRCh38]
Chr4:152498906 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2489G>A (p.Gly830Glu) single nucleotide variant not specified [RCV004394284] Chr4:151650530 [GRCh38]
Chr4:152571682 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2693A>G (p.Asn898Ser) single nucleotide variant not specified [RCV004394290] Chr4:151656373 [GRCh38]
Chr4:152577525 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2828G>A (p.Arg943His) single nucleotide variant not specified [RCV004394294] Chr4:151656857 [GRCh38]
Chr4:152578009 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1243A>C (p.Asn415His) single nucleotide variant not specified [RCV004394263] Chr4:151646574 [GRCh38]
Chr4:152567726 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1441G>A (p.Glu481Lys) single nucleotide variant not specified [RCV004394265] Chr4:151649482 [GRCh38]
Chr4:152570634 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1664C>T (p.Pro555Leu) single nucleotide variant not specified [RCV004394272] Chr4:151649705 [GRCh38]
Chr4:152570857 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2274C>G (p.Ile758Met) single nucleotide variant not specified [RCV004394280] Chr4:151650315 [GRCh38]
Chr4:152571467 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2717G>A (p.Arg906His) single nucleotide variant not specified [RCV004394291] Chr4:151656397 [GRCh38]
Chr4:152577549 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.3012G>A (p.Met1004Ile) single nucleotide variant not specified [RCV004394296] Chr4:151662643 [GRCh38]
Chr4:152583795 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.449G>A (p.Cys150Tyr) single nucleotide variant not specified [RCV004394303] Chr4:151577793 [GRCh38]
Chr4:152498945 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1043A>G (p.Glu348Gly) single nucleotide variant not specified [RCV004394259] Chr4:151629766 [GRCh38]
Chr4:152550918 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1094A>G (p.Glu365Gly) single nucleotide variant not specified [RCV004394260] Chr4:151629817 [GRCh38]
Chr4:152550969 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1144C>T (p.Arg382Trp) single nucleotide variant not specified [RCV004394261] Chr4:151629867 [GRCh38]
Chr4:152551019 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1369C>A (p.Gln457Lys) single nucleotide variant not specified [RCV004394264] Chr4:151646700 [GRCh38]
Chr4:152567852 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1637G>T (p.Ser546Ile) single nucleotide variant not specified [RCV004394270] Chr4:151649678 [GRCh38]
Chr4:152570830 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.1831A>C (p.Ile611Leu) single nucleotide variant not specified [RCV004394273] Chr4:151649872 [GRCh38]
Chr4:152571024 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2989C>T (p.Pro997Ser) single nucleotide variant not specified [RCV004394295] Chr4:151662620 [GRCh38]
Chr4:152583772 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.364T>A (p.Tyr122Asn) single nucleotide variant not specified [RCV004394299] Chr4:151577708 [GRCh38]
Chr4:152498860 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.386C>T (p.Ser129Leu) single nucleotide variant not specified [RCV004394301] Chr4:151577730 [GRCh38]
Chr4:152498882 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.652G>T (p.Ala218Ser) single nucleotide variant not specified [RCV004394305] Chr4:151577996 [GRCh38]
Chr4:152499148 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.974A>G (p.His325Arg) single nucleotide variant not specified [RCV004394310] Chr4:151588922 [GRCh38]
Chr4:152510074 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.20C>T (p.Thr7Ile) single nucleotide variant not specified [RCV004394277] Chr4:151566279 [GRCh38]
Chr4:152487431 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2237C>T (p.Pro746Leu) single nucleotide variant not specified [RCV004394279] Chr4:151650278 [GRCh38]
Chr4:152571430 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.244G>A (p.Asp82Asn) single nucleotide variant not specified [RCV004394283] Chr4:151577588 [GRCh38]
Chr4:152498740 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.2516G>A (p.Arg839His) single nucleotide variant not specified [RCV004394285] Chr4:151650557 [GRCh38]
Chr4:152571709 [GRCh37]
Chr4:4q31.3		 likely benign
NM_001109977.3(FHIP1A):c.2537G>T (p.Ser846Ile) single nucleotide variant not specified [RCV004394286] Chr4:151650578 [GRCh38]
Chr4:152571730 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.379A>G (p.Thr127Ala) single nucleotide variant not specified [RCV004394300] Chr4:151577723 [GRCh38]
Chr4:152498875 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.76A>G (p.Met26Val) single nucleotide variant not specified [RCV004394308] Chr4:151566335 [GRCh38]
Chr4:152487487 [GRCh37]
Chr4:4q31.3		 uncertain significance
NM_001109977.3(FHIP1A):c.457A>T (p.Thr153Ser) single nucleotide variant not specified [RCV004349701] Chr4:151577801 [GRCh38]
Chr4:152498953 [GRCh37]
Chr4:4q31.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1738
Count of miRNA genes:673
Interacting mature miRNAs:768
Transcripts:ENST00000435205, ENST00000503146, ENST00000505231, ENST00000508198, ENST00000511501, ENST00000512597, ENST00000513086, ENST00000513962
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-51206  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374152,490,882 - 152,490,973UniSTSGRCh37
Build 364152,710,332 - 152,710,423RGDNCBI36
Celera4149,814,783 - 149,814,874RGD
Cytogenetic Map4q31.3UniSTS
TNG Radiation Hybrid Map491106.0UniSTS
SHGC-57096  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374152,329,038 - 152,329,135UniSTSGRCh37
Build 364152,548,488 - 152,548,585RGDNCBI36
Celera4149,653,423 - 149,653,520RGD
Cytogenetic Map4q31.3UniSTS
HuRef4148,053,523 - 148,053,620UniSTS
TNG Radiation Hybrid Map491051.0UniSTS
SHGC-68685  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374152,401,328 - 152,401,604UniSTSGRCh37
Build 364152,620,778 - 152,621,054RGDNCBI36
Celera4149,725,229 - 149,725,505RGD
Cytogenetic Map4q31.3UniSTS
HuRef4148,126,253 - 148,126,529UniSTS
TNG Radiation Hybrid Map491087.0UniSTS
SHGC-105026  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374152,487,676 - 152,487,969UniSTSGRCh37
Build 364152,707,126 - 152,707,419RGDNCBI36
Celera4149,811,577 - 149,811,870RGD
Cytogenetic Map4q31.3UniSTS
HuRef4148,213,271 - 148,213,564UniSTS
TNG Radiation Hybrid Map491101.0UniSTS
SHGC-146808  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374152,347,292 - 152,347,616UniSTSGRCh37
Build 364152,566,742 - 152,567,066RGDNCBI36
Celera4149,670,881 - 149,671,205RGD
Cytogenetic Map4q31.3UniSTS
HuRef4148,072,217 - 148,072,541UniSTS
TNG Radiation Hybrid Map491065.0UniSTS
G65552  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374152,571,057 - 152,571,343UniSTSGRCh37
Build 364152,790,507 - 152,790,793RGDNCBI36
Celera4149,894,960 - 149,895,246RGD
Cytogenetic Map4q31.3UniSTS
HuRef4148,296,564 - 148,296,850UniSTS
D4S1324  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374152,490,889 - 152,491,031UniSTSGRCh37
Build 364152,710,339 - 152,710,481RGDNCBI36
Celera4149,814,790 - 149,814,932RGD
Cytogenetic Map4q31.3UniSTS
D4S481  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374152,364,786 - 152,364,954UniSTSGRCh37
Build 364152,584,236 - 152,584,404RGDNCBI36
Celera4149,688,374 - 149,688,554RGD
Cytogenetic Map4q31.3UniSTS
HuRef4148,089,710 - 148,089,878UniSTS
TNG Radiation Hybrid Map491083.0UniSTS
Stanford-G3 RH Map48303.0UniSTS
NCBI RH Map41557.8UniSTS
D4S848  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374152,358,214 - 152,358,361UniSTSGRCh37
Build 364152,577,664 - 152,577,811RGDNCBI36
Celera4149,681,803 - 149,681,950RGD
Cytogenetic Map4q31.3UniSTS
HuRef4148,083,138 - 148,083,285UniSTS
D4S942  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374152,337,458 - 152,337,634UniSTSGRCh37
Build 364152,556,908 - 152,557,084RGDNCBI36
Celera4149,661,894 - 149,662,070RGD
Cytogenetic Map4q31.3UniSTS
HuRef4148,062,397 - 148,062,573UniSTS
TNG Radiation Hybrid Map491074.0UniSTS
D4S1123  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374152,552,366 - 152,552,529UniSTSGRCh37
Build 364152,771,816 - 152,771,979RGDNCBI36
Celera4149,876,267 - 149,876,430RGD
Cytogenetic Map4q31.3UniSTS
HuRef4148,277,873 - 148,278,036UniSTS
TNG Radiation Hybrid Map491111.0UniSTS
Stanford-G3 RH Map48312.0UniSTS
NCBI RH Map41558.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 42 21 7 4 4 1169 151 7 15 79 82 11 620
Low 1216 1231 1266 321 367 166 2014 1252 1464 362 1315 1435 163 1 353 1667 4 1
Below cutoff 1174 1698 409 270 1298 269 1150 780 2073 40 65 93 828 501 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001348694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005263199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011532220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011532221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011532223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011532224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024454201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054350780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054350781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054350782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054350783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054350784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054350785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054350786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054350787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA021504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC079795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC092611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC097455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK125363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV410375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA722299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000435205   ⟹   ENSP00000413196
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4151,409,176 - 151,670,503 (+)Ensembl
RefSeq Acc Id: ENST00000503146   ⟹   ENSP00000424175
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4151,409,246 - 151,577,464 (+)Ensembl
RefSeq Acc Id: ENST00000505231   ⟹   ENSP00000421580
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4151,533,012 - 151,663,628 (+)Ensembl
RefSeq Acc Id: ENST00000508198
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4151,409,216 - 151,566,258 (+)Ensembl
RefSeq Acc Id: ENST00000508664
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4151,667,224 - 151,670,502 (+)Ensembl
RefSeq Acc Id: ENST00000511501
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4151,409,352 - 151,534,776 (+)Ensembl
RefSeq Acc Id: ENST00000512597   ⟹   ENSP00000421948
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4151,482,609 - 151,577,524 (+)Ensembl
RefSeq Acc Id: ENST00000513086   ⟹   ENSP00000425333
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4151,409,352 - 151,566,299 (+)Ensembl
RefSeq Acc Id: ENST00000513962   ⟹   ENSP00000426677
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4151,436,435 - 151,577,471 (+)Ensembl
RefSeq Acc Id: NM_001109977   ⟹   NP_001103447
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,409,176 - 151,670,503 (+)NCBI
GRCh374152,330,398 - 152,591,655 (+)NCBI
Celera4149,654,831 - 149,908,687 (+)RGD
HuRef4148,055,337 - 148,310,292 (+)RGD
CHM1_14152,307,963 - 152,562,804 (+)NCBI
T2T-CHM13v2.04154,733,031 - 154,993,605 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001348694   ⟹   NP_001335623
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,409,176 - 151,670,503 (+)NCBI
T2T-CHM13v2.04154,733,031 - 154,993,605 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005263199   ⟹   XP_005263256
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,409,176 - 151,670,503 (+)NCBI
GRCh374152,330,398 - 152,591,655 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011532220   ⟹   XP_011530522
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,532,987 - 151,670,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011532221   ⟹   XP_011530523
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,409,176 - 151,670,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011532223   ⟹   XP_011530525
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,409,176 - 151,670,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011532224   ⟹   XP_011530526
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,552,526 - 151,670,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017008583   ⟹   XP_016864072
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,639,610 - 151,670,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024454201   ⟹   XP_024309969
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,409,176 - 151,670,503 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047416127   ⟹   XP_047272083
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,409,176 - 151,670,503 (+)NCBI
RefSeq Acc Id: XM_054350780   ⟹   XP_054206755
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04154,733,031 - 154,993,605 (+)NCBI
RefSeq Acc Id: XM_054350781   ⟹   XP_054206756
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04154,733,031 - 154,993,605 (+)NCBI
RefSeq Acc Id: XM_054350782   ⟹   XP_054206757
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04154,733,031 - 154,993,605 (+)NCBI
RefSeq Acc Id: XM_054350783   ⟹   XP_054206758
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04154,733,031 - 154,993,605 (+)NCBI
RefSeq Acc Id: XM_054350784   ⟹   XP_054206759
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04154,733,031 - 154,993,605 (+)NCBI
RefSeq Acc Id: XM_054350785   ⟹   XP_054206760
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04154,856,089 - 154,993,605 (+)NCBI
RefSeq Acc Id: XM_054350786   ⟹   XP_054206761
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04154,875,628 - 154,993,605 (+)NCBI
RefSeq Acc Id: XM_054350787   ⟹   XP_054206762
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04154,962,712 - 154,993,605 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001103447   ⟸   NM_001109977
- UniProtKB: Q6ZUS2 (UniProtKB/Swiss-Prot),   Q05DH4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005263256   ⟸   XM_005263199
- Peptide Label: isoform X1
- UniProtKB: Q6ZUS2 (UniProtKB/Swiss-Prot),   Q05DH4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011530523   ⟸   XM_011532221
- Peptide Label: isoform X1
- UniProtKB: Q6ZUS2 (UniProtKB/Swiss-Prot),   Q05DH4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011530525   ⟸   XM_011532223
- Peptide Label: isoform X1
- UniProtKB: Q6ZUS2 (UniProtKB/Swiss-Prot),   Q05DH4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011530522   ⟸   XM_011532220
- Peptide Label: isoform X1
- UniProtKB: Q6ZUS2 (UniProtKB/Swiss-Prot),   Q05DH4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011530526   ⟸   XM_011532224
- Peptide Label: isoform X1
- UniProtKB: Q6ZUS2 (UniProtKB/Swiss-Prot),   Q05DH4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016864072   ⟸   XM_017008583
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_024309969   ⟸   XM_024454201
- Peptide Label: isoform X1
- UniProtKB: Q05DH4 (UniProtKB/Swiss-Prot),   Q6ZUS2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001335623   ⟸   NM_001348694
- UniProtKB: Q6ZUS2 (UniProtKB/Swiss-Prot),   Q05DH4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000424175   ⟸   ENST00000503146
RefSeq Acc Id: ENSP00000421580   ⟸   ENST00000505231
RefSeq Acc Id: ENSP00000421948   ⟸   ENST00000512597
RefSeq Acc Id: ENSP00000426677   ⟸   ENST00000513962
RefSeq Acc Id: ENSP00000425333   ⟸   ENST00000513086
RefSeq Acc Id: ENSP00000413196   ⟸   ENST00000435205
RefSeq Acc Id: XP_047272083   ⟸   XM_047416127
- Peptide Label: isoform X1
- UniProtKB: Q05DH4 (UniProtKB/Swiss-Prot),   Q6ZUS2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054206755   ⟸   XM_054350780
- Peptide Label: isoform X1
- UniProtKB: Q05DH4 (UniProtKB/Swiss-Prot),   Q6ZUS2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054206759   ⟸   XM_054350784
- Peptide Label: isoform X1
- UniProtKB: Q05DH4 (UniProtKB/Swiss-Prot),   Q6ZUS2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054206756   ⟸   XM_054350781
- Peptide Label: isoform X1
- UniProtKB: Q05DH4 (UniProtKB/Swiss-Prot),   Q6ZUS2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054206757   ⟸   XM_054350782
- Peptide Label: isoform X1
- UniProtKB: Q05DH4 (UniProtKB/Swiss-Prot),   Q6ZUS2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054206758   ⟸   XM_054350783
- Peptide Label: isoform X1
- UniProtKB: Q05DH4 (UniProtKB/Swiss-Prot),   Q6ZUS2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054206760   ⟸   XM_054350785
- Peptide Label: isoform X1
- UniProtKB: Q05DH4 (UniProtKB/Swiss-Prot),   Q6ZUS2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054206761   ⟸   XM_054350786
- Peptide Label: isoform X1
- UniProtKB: Q05DH4 (UniProtKB/Swiss-Prot),   Q6ZUS2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054206762   ⟸   XM_054350787
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q05DH4-F1-model_v2 AlphaFold Q05DH4 1-1040 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:34237 AgrOrtholog
COSMIC FHIP1A COSMIC
Ensembl Genes ENSG00000164142 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000435205 ENTREZGENE
  ENST00000435205.6 UniProtKB/Swiss-Prot
  ENST00000503146.5 UniProtKB/TrEMBL
  ENST00000505231 ENTREZGENE
  ENST00000505231.1 UniProtKB/Swiss-Prot
  ENST00000512597.5 UniProtKB/TrEMBL
  ENST00000513086.5 UniProtKB/TrEMBL
  ENST00000513962.5 UniProtKB/TrEMBL
GTEx ENSG00000164142 GTEx
HGNC ID HGNC:34237 ENTREZGENE
Human Proteome Map FHIP1A Human Proteome Map
InterPro FHIP_C UniProtKB/Swiss-Prot
  FHIP_KELAA_motif UniProtKB/Swiss-Prot
  RetinoicA-induced_16-like UniProtKB/Swiss-Prot
KEGG Report hsa:729830 UniProtKB/Swiss-Prot
NCBI Gene 729830 ENTREZGENE
PANTHER FHF COMPLEX SUBUNIT HOOK INTERACTING PROTEIN 1A UniProtKB/Swiss-Prot
  PTHR21705 UniProtKB/Swiss-Prot
Pfam DUF5917 UniProtKB/Swiss-Prot
  KELAA UniProtKB/Swiss-Prot
  RAI16-like UniProtKB/Swiss-Prot
UniProt D6RAG2_HUMAN UniProtKB/TrEMBL
  D6RBF5_HUMAN UniProtKB/TrEMBL
  D6RDL4_HUMAN UniProtKB/TrEMBL
  D6RF38_HUMAN UniProtKB/TrEMBL
  F16A1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q6ZUS2 ENTREZGENE
UniProt Secondary Q6ZUS2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-25 FHIP1A  FHF complex subunit HOOK interacting protein 1A  FAM160A1  family with sequence similarity 160 member A1  Symbol and/or name change 19259463 PROVISIONAL
2015-11-24 FAM160A1  family with sequence similarity 160 member A1    family with sequence similarity 160, member A1  Symbol and/or name change 5135510 APPROVED