RNU7-4P (RNA, U7 small nuclear 4 pseudogene) - Rat Genome Database

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Gene: RNU7-4P (RNA, U7 small nuclear 4 pseudogene) Homo sapiens
Analyze
Symbol: RNU7-4P
Name: RNA, U7 small nuclear 4 pseudogene
RGD ID: 2293171
HGNC Page HGNC:34100
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Previously known as: RNU7-132P; U7.4
Related Functional Gene: RNU7-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381268,911,921 - 68,911,980 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1268,911,921 - 68,911,982 (+)EnsemblGRCh38hg38GRCh38
GRCh371269,305,701 - 69,305,760 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1268,969,416 - 68,969,675 (+)NCBICelera
Cytogenetic Map12q15NCBI
HuRef1266,356,110 - 66,356,369 (+)NCBIHuRef
CHM1_11269,274,304 - 69,274,363 (+)NCBICHM1_1
T2T-CHM13v2.01268,891,498 - 68,891,557 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:18267300  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:160
Count of miRNA genes:157
Interacting mature miRNAs:160
Transcripts:ENST00000516961
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 11 2 17 15 8 15 3 1 3 17 11 19 1 2 1
Below cutoff 2 1 2 3 4 2 3 1 2 2 1 1 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516961
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1268,911,921 - 68,911,982 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU7-4P COSMIC
Ensembl Genes ENSG00000252770 Ensembl, ENTREZGENE
GTEx ENSG00000252770 GTEx
HGNC ID HGNC:34100 ENTREZGENE
Human Proteome Map RNU7-4P Human Proteome Map
NCBI Gene 100147747 ENTREZGENE