TSPY6P (testis specific protein Y-linked 6, pseudogene) - Rat Genome Database

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Gene: TSPY6P (testis specific protein Y-linked 6, pseudogene) Homo sapiens
Analyze
Symbol: TSPY6P
Name: testis specific protein Y-linked 6, pseudogene
RGD ID: 2292189
HGNC Page HGNC:34039
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: testis specific protein, Y-linked 6, pseudogene; TSPYP6
Related Functional Gene: TSPY1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y9,507,550 - 9,510,363 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY9,507,596 - 9,510,175 (+)EnsemblGRCh38hg38GRCh38
GRCh37Y9,345,159 - 9,347,972 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y9,955,163 - 9,957,973 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic MapYp11.2NCBI
T2T-CHM13v2.0Y9,166,820 - 9,169,634 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:279
Count of miRNA genes:223
Interacting mature miRNAs:233
Transcripts:ENST00000440215, ENST00000446779, ENST00000448518
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 1
Low 2 4 3 3 3 2 1 182 7
Below cutoff 11 17 15 12 8 11 28 9 37 2 181 19 1 6 17

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000448518
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblY9,507,596 - 9,510,175 (+)Ensembl
RefSeq Acc Id: XR_016233
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36Y9,955,163 - 9,957,973 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC TSPY6P COSMIC
Ensembl Genes ENSG00000270073 Ensembl, ENTREZGENE
GTEx ENSG00000270073 GTEx
HGNC ID HGNC:34039 ENTREZGENE
Human Proteome Map TSPY6P Human Proteome Map
NCBI Gene 653174 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 TSPY6P  testis specific protein Y-linked 6, pseudogene    testis specific protein, Y-linked 6, pseudogene  Symbol and/or name change 5135510 APPROVED
2011-07-27 TSPY6P  testis specific protein, Y-linked 6, pseudogene  TSPYP6  testis specific protein, Y-linked pseudogene 6  Symbol and/or name change 5135510 APPROVED