IMPDH1P3 (inosine monophosphate dehydrogenase 1 pseudogene 3) - Rat Genome Database

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Gene: IMPDH1P3 (inosine monophosphate dehydrogenase 1 pseudogene 3) Homo sapiens
Analyze
Symbol: IMPDH1P3
Name: inosine monophosphate dehydrogenase 1 pseudogene 3
RGD ID: 2289880
HGNC Page HGNC:33958
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: IMP (inosine monophosphate) dehydrogenase 1 pseudogene 3
Related Functional Gene: IMPDH1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387138,440,573 - 138,442,940 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7138,440,690 - 138,442,238 (+)EnsemblGRCh38hg38GRCh38
GRCh377138,125,318 - 138,127,685 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367137,775,873 - 137,778,325 (+)NCBINCBI36Build 36hg18NCBI36
Celera7132,864,001 - 132,866,348 (+)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7132,434,469 - 132,436,816 (+)NCBIHuRef
CHM1_17138,058,616 - 138,060,963 (+)NCBICHM1_1
T2T-CHM13v2.07139,750,267 - 139,752,634 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27137,470,422 - 137,472,769 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:380
Count of miRNA genes:338
Interacting mature miRNAs:378
Transcripts:ENST00000399037
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
GDB:3754164  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377138,127,868 - 138,127,977UniSTSGRCh37
Build 367137,778,408 - 137,778,517RGDNCBI36
Celera7132,866,531 - 132,866,640RGD
Cytogenetic Map7q33UniSTS
HuRef7132,436,999 - 132,437,108UniSTS
CRA_TCAGchr7v27137,472,952 - 137,473,061UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 2 1 3 1 3 1 3 1 7 12 1
Below cutoff 216 315 194 49 258 32 383 154 267 30 377 173 22 129 198

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000399037
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7138,440,690 - 138,442,238 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IMPDH1P3 COSMIC
Ensembl Genes ENSG00000214815 Ensembl
GTEx ENSG00000214815 GTEx
HGNC ID HGNC:33958 ENTREZGENE
Human Proteome Map IMPDH1P3 Human Proteome Map
NCBI Gene 136307 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-30 IMPDH1P3  inosine monophosphate dehydrogenase 1 pseudogene 3    IMP (inosine monophosphate) dehydrogenase 1 pseudogene 3  Symbol and/or name change 5135510 APPROVED