ATG3P1 (autophagy related 3 pseudogene 1) - Rat Genome Database

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Gene: ATG3P1 (autophagy related 3 pseudogene 1) Homo sapiens
Analyze
Symbol: ATG3P1
Name: autophagy related 3 pseudogene 1
RGD ID: 2289735
HGNC Page HGNC:31123
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AGP3; ATG3P; dJ54G6.1
Related Functional Gene: ATG3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382039,328,855 - 39,330,000 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2039,329,014 - 39,329,924 (-)EnsemblGRCh38hg38GRCh38
GRCh372037,957,498 - 37,958,643 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera2034,668,259 - 34,669,404 (-)NCBICelera
Cytogenetic Map20q12NCBI
HuRef2034,695,036 - 34,696,181 (-)NCBIHuRef
CHM1_12037,861,806 - 37,862,951 (-)NCBICHM1_1
T2T-CHM13v2.02041,060,318 - 41,061,463 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:57
Interacting mature miRNAs:57
Transcripts:ENST00000419507
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1 1
Below cutoff 33 48 30 15 43 13 82 46 90 4 65 28 2 15 60

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000419507
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2039,329,014 - 39,329,924 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ATG3P1 COSMIC
Ensembl Genes ENSG00000224357 Ensembl
GTEx ENSG00000224357 GTEx
HGNC ID HGNC:31123 ENTREZGENE
Human Proteome Map ATG3P1 Human Proteome Map
NCBI Gene 100135756 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-06-12 ATG3P1  autophagy related 3 pseudogene 1  ATG3P1  ATG3 autophagy related 3 homolog (S. cerevisiae) pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 ATG3P1  ATG3 autophagy related 3 homolog (S. cerevisiae) pseudogene 1  ATG3P  ATG3 autophagy related 3 homolog (S. cerevisiae) pseudogene  Symbol and/or name change 5135510 APPROVED