SPTLC2 (serine palmitoyltransferase long chain base subunit 2) - Rat Genome Database

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Gene: SPTLC2 (serine palmitoyltransferase long chain base subunit 2) Chlorocebus sabaeus
Analyze
Symbol: SPTLC2
Name: serine palmitoyltransferase long chain base subunit 2
RGD ID: 20866787
Description: ENCODES a protein that exhibits acyltransferase activity (inferred); pyridoxal phosphate binding (inferred); serine C-palmitoyltransferase activity (inferred); INVOLVED IN biosynthetic process (inferred); ceramide biosynthetic process (inferred); sphingosine biosynthetic process (inferred); FOUND IN serine C-palmitoyltransferase complex (inferred)
Type: protein-coding
Latest Assembly: ChlSab1.1 Ensembl - Green Monkey 1.1 Assembly Ensembl
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl2454,769,340 - 54,823,210 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 34 17 59
Low 2 3 1
Below cutoff

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSCSAT00000009831   ⟹   ENSCSAP00000007940
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2454,769,340 - 54,823,210 (-)Ensembl
Protein Sequences
Ensembl Protein ENSCSAP00000007940.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000007940   ⟸   ENSCSAT00000009831


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011741 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009831.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
InterPro Aminotrans_II_pyridoxalP_BS UniProtKB/TrEMBL
  Aminotransferase_I/II UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_dom1 UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
PANTHER CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE UniProtKB/TrEMBL
  SERINE PALMITOYLTRANSFERASE 2 UniProtKB/TrEMBL
Pfam Aminotran_1_2 UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt A0A0D9RH51_CHLSB UniProtKB/TrEMBL