Cacng3 (calcium voltage-gated channel auxiliary subunit gamma 3) - Rat Genome Database

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Gene: Cacng3 (calcium voltage-gated channel auxiliary subunit gamma 3) Heterocephalus glaber
Analyze
Symbol: Cacng3
Name: calcium voltage-gated channel auxiliary subunit gamma 3
RGD ID: 18936389
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN positive regulation of AMPA receptor activity (ortholog); ASSOCIATED WITH childhood absence epilepsy (ortholog); macular degeneration (ortholog); FOUND IN dendrite (ortholog); excitatory synapse (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Voltage-dependent calcium channel gamma-3 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247829,319,277 - 9,408,821 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247829,319,318 - 9,408,620 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cacng3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247829,319,277 - 9,408,821 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247829,319,318 - 9,408,620 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CACNG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381624,256,335 - 24,362,412 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1624,256,335 - 24,362,412 (+)EnsemblGRCh38hg38GRCh38
GRCh371624,267,656 - 24,373,733 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361624,174,377 - 24,281,238 (+)NCBINCBI36Build 36hg18NCBI36
Build 341624,174,376 - 24,281,238NCBI
Celera1623,044,814 - 23,151,626 (+)NCBICelera
Cytogenetic Map16p12.1NCBI
HuRef1622,357,514 - 22,464,192 (+)NCBIHuRef
CHM1_11625,279,898 - 25,387,338 (+)NCBICHM1_1
T2T-CHM13v2.01624,532,831 - 24,639,260 (+)NCBIT2T-CHM13v2.0
Cacng3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397122,270,967 - 122,368,616 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7122,269,715 - 122,368,616 (+)EnsemblGRCm39 Ensembl
GRCm387122,671,744 - 122,769,393 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7122,670,492 - 122,769,393 (+)EnsemblGRCm38mm10GRCm38
MGSCv377129,815,258 - 129,912,907 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367122,462,922 - 122,559,994 (+)NCBIMGSCv36mm8
Celera7122,557,841 - 122,658,275 (+)NCBICelera
Cytogenetic Map7F2NCBI
cM Map766.81NCBI
Cacng3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81186,632,334 - 186,728,220 (+)NCBIGRCr8
mRatBN7.21177,201,361 - 177,297,019 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1177,201,288 - 177,297,024 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1185,530,079 - 185,624,581 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01192,716,035 - 192,810,537 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01185,400,681 - 185,495,253 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01192,613,766 - 192,708,371 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1192,613,372 - 192,709,078 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01199,676,988 - 199,771,889 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41181,498,716 - 181,594,090 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11181,638,630 - 181,734,005 (+)NCBI
Celera1174,909,742 - 175,002,485 (+)NCBICelera
Cytogenetic Map1q36NCBI
Cacng3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554932,742,096 - 2,841,403 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554932,742,096 - 2,841,353 (+)NCBIChiLan1.0ChiLan1.0
CACNG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21825,668,414 - 25,775,243 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11630,188,707 - 30,295,523 (+)NCBINHGRI_mPanPan1
PanPan1.11624,501,881 - 24,608,921 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1624,501,881 - 24,608,921 (+)Ensemblpanpan1.1panPan2
CACNG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1621,626,977 - 21,712,331 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl621,627,547 - 21,711,635 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha623,188,831 - 23,274,205 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0621,764,445 - 21,849,816 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl621,764,445 - 21,849,806 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1621,569,695 - 21,655,198 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0621,472,243 - 21,557,090 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0621,866,262 - 21,951,817 (-)NCBIUU_Cfam_GSD_1.0
Cacng3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344120,664,522 - 120,743,045 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365018,762,376 - 8,840,915 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365018,762,386 - 8,840,123 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl321,855,855 - 21,961,187 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1321,855,847 - 21,961,191 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2322,759,942 - 22,865,619 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1521,975,706 - 22,081,428 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl521,976,428 - 22,081,547 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660687,691,896 - 7,799,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017569   ⟹   ENSHGLP00000017396
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247829,319,277 - 9,408,821 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000017570   ⟹   ENSHGLP00000017397
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247829,319,977 - 9,407,765 (+)Ensembl
RefSeq Acc Id: XM_004855959   ⟹   XP_004856016
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247829,319,318 - 9,408,620 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004856016 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13174 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017396
  ENSHGLP00100011442
Reference Protein Sequences
RefSeq Acc Id: XP_004856016   ⟸   XM_004855959
- UniProtKB: G5BV63 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000017396   ⟸   ENSHGLT00000017569
RefSeq Acc Id: ENSHGLP00000017397   ⟸   ENSHGLT00000017570


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012458 Ensembl, ENTREZGENE
  ENSHGLG00100008492 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000017569 ENTREZGENE
  ENSHGLT00100011576 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/TrEMBL
KEGG Report hgl:101723508 UniProtKB/TrEMBL
NCBI Gene Cacng3 ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-3 SUBUNIT UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS VDCCGAMMA UniProtKB/TrEMBL
UniProt G5BV63 ENTREZGENE, UniProtKB/TrEMBL