Acd (ACD shelterin complex subunit and telomerase recruitment factor) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Acd (ACD shelterin complex subunit and telomerase recruitment factor) Heterocephalus glaber
Analyze
Symbol: Acd
Name: ACD shelterin complex subunit and telomerase recruitment factor
RGD ID: 18935711
Description: ENCODES a protein that exhibits DNA polymerase binding (ortholog); protein-containing complex binding (ortholog); telomeric DNA binding (ortholog); INVOLVED IN embryonic limb morphogenesis (ortholog); establishment of protein localization to telomere (ortholog); intracellular protein transport (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Autosomal Recessive Dyskeratosis Congenita 7 (ortholog); chromosome 16q22 deletion syndrome (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear body (ortholog); nuclear telomere cap complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adrenocortical dysplasia homolog; adrenocortical dysplasia protein homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,689,364 - 18,695,944 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,688,898 - 18,692,216 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Acd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,689,364 - 18,695,944 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,688,898 - 18,692,216 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ACD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,657,512 - 67,660,260 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,657,512 - 67,660,810 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,691,415 - 67,694,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,248,916 - 66,252,219 (-)NCBINCBI36Build 36hg18NCBI36
Build 341666,248,933 - 66,252,214NCBI
Celera1652,199,905 - 52,203,208 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,564,327 - 53,567,630 (-)NCBIHuRef
CHM1_11669,099,128 - 69,102,431 (-)NCBICHM1_1
T2T-CHM13v2.01673,452,280 - 73,455,028 (-)NCBIT2T-CHM13v2.0
Acd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,424,789 - 106,427,748 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,422,492 - 106,427,734 (-)EnsemblGRCm39 Ensembl
GRCm388105,698,155 - 105,701,228 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,695,860 - 105,701,102 (-)EnsemblGRCm38mm10GRCm38
MGSCv378108,222,059 - 108,224,995 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,587,288 - 108,590,224 (-)NCBIMGSCv36mm8
Celera8109,923,077 - 109,926,013 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Acd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,496,634 - 50,499,397 (-)NCBIGRCr8
mRatBN7.21933,586,739 - 33,589,481 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,586,745 - 33,589,461 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,402,316 - 40,405,008 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,055,648 - 41,058,340 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,353,421 - 43,356,113 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,665,289 - 37,668,043 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,665,296 - 37,667,987 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,531,999 - 48,534,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,530,557 - 35,533,249 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1933,014,692 - 33,017,384 (-)NCBICelera
Cytogenetic Map19q12NCBI
Acd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,022,520 - 9,025,446 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554849,022,520 - 9,025,446 (+)NCBIChiLan1.0ChiLan1.0
ACD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,185,709 - 77,188,986 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,098,176 - 83,101,453 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,001,408 - 48,004,620 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,390,703 - 67,393,685 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,390,703 - 67,393,685 (-)Ensemblpanpan1.1panPan2
ACD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,789,915 - 81,792,725 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,789,997 - 81,792,639 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,779,673 - 81,782,484 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,225,079 - 82,227,897 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,225,104 - 82,286,231 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,051,408 - 82,054,221 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,732,943 - 81,735,752 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,375,492 - 82,378,294 (+)NCBIUU_Cfam_GSD_1.0
Acd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,536,955 - 41,539,974 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,045,662 - 18,052,172 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,049,134 - 18,052,123 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,277,614 - 28,280,405 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,277,649 - 28,280,409 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ACD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,783,842 - 59,787,117 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,784,178 - 59,787,032 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,537,668 - 22,540,863 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015815   ⟹   ENSHGLP00000015651
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474618,689,364 - 18,695,944 (+)Ensembl
RefSeq Acc Id: XM_013071544   ⟹   XP_012926998
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,688,900 - 18,692,216 (+)NCBI
RefSeq Acc Id: XM_021256851   ⟹   XP_021112510
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,688,899 - 18,692,216 (+)NCBI
RefSeq Acc Id: XM_021256852   ⟹   XP_021112511
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,688,899 - 18,692,216 (+)NCBI
RefSeq Acc Id: XM_021256853   ⟹   XP_021112512
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,688,899 - 18,692,216 (+)NCBI
RefSeq Acc Id: XM_021256854   ⟹   XP_021112513
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,688,898 - 18,692,216 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012926998 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112510 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112511 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112512 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112513 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015651
Reference Protein Sequences
RefSeq Acc Id: XP_021112513   ⟸   XM_021256854
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021112512   ⟸   XM_021256853
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021112511   ⟸   XM_021256852
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021112510   ⟸   XM_021256851
- Peptide Label: isoform X1
RefSeq Acc Id: XP_012926998   ⟸   XM_013071544
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000015651   ⟸   ENSHGLT00000015815


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011190 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015815 ENTREZGENE
NCBI Gene Acd ENTREZGENE