Tex12 (testis expressed 12) - Rat Genome Database

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Gene: Tex12 (testis expressed 12) Heterocephalus glaber
Analyze
Symbol: Tex12
Name: testis expressed 12
RGD ID: 18935581
Description: INVOLVED IN meiotic DNA repair synthesis (ortholog); synaptonemal complex assembly (ortholog); ASSOCIATED WITH BH4-deficient hyperphenylalaninemia A (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); intellectual disability (ortholog); FOUND IN central element (inferred); chromosome (inferred); synaptonemal complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: testis-expressed protein 12; testis-expressed sequence 12 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247847,317,507 - 7,322,619 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247847,317,642 - 7,324,128 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tex12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247847,317,507 - 7,322,619 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247847,317,642 - 7,324,128 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TEX12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811112,167,372 - 112,172,556 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11112,167,372 - 112,172,556 (+)EnsemblGRCh38hg38GRCh38
GRCh3711112,038,095 - 112,043,279 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611111,543,305 - 111,548,489 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411111,543,304 - 111,548,489NCBI
Celera11109,191,328 - 109,196,512 (+)NCBICelera
Cytogenetic Map11q23.1NCBI
HuRef11107,962,266 - 107,967,451 (+)NCBIHuRef
CHM1_111111,921,558 - 111,926,733 (+)NCBICHM1_1
T2T-CHM13v2.011112,177,701 - 112,182,885 (+)NCBIT2T-CHM13v2.0
Tex12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39950,468,448 - 50,472,568 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl950,468,119 - 50,472,625 (-)EnsemblGRCm39 Ensembl
GRCm38950,557,148 - 50,561,268 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl950,556,819 - 50,561,325 (-)EnsemblGRCm38mm10GRCm38
MGSCv37950,365,253 - 50,369,373 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36950,309,049 - 50,313,555 (-)NCBIMGSCv36mm8
Celera947,852,089 - 47,856,215 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map927.75NCBI
Tex12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8859,804,662 - 59,809,595 (-)NCBIGRCr8
mRatBN7.2850,908,161 - 50,913,202 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl850,909,052 - 50,913,217 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx856,415,232 - 56,417,262 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0854,694,130 - 54,696,160 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0852,558,406 - 52,560,436 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0854,991,501 - 54,999,454 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl854,992,841 - 54,994,871 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0853,588,887 - 53,597,656 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4853,919,759 - 53,921,789 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera850,458,020 - 50,460,050 (-)NCBICelera
Cytogenetic Map8q23NCBI
Tex12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541213,831,353 - 13,834,481 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541213,829,637 - 13,834,481 (+)NCBIChiLan1.0ChiLan1.0
TEX12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29112,912,680 - 112,918,879 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111114,007,026 - 114,012,280 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011107,048,417 - 107,053,655 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111110,891,636 - 110,896,829 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11110,817,016 - 110,896,829 (+)Ensemblpanpan1.1panPan2
TEX12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1520,968,201 - 20,972,710 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl520,968,185 - 20,972,850 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha520,890,863 - 20,895,367 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0520,990,427 - 20,994,929 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl520,990,411 - 20,993,151 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1521,053,258 - 21,057,763 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0520,953,522 - 20,958,026 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0521,001,692 - 21,006,197 (-)NCBIUU_Cfam_GSD_1.0
Tex12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494794,402,493 - 94,408,253 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366122,297,754 - 2,303,130 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl939,864,148 - 39,869,979 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1939,864,093 - 39,869,572 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2944,716,292 - 44,721,731 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015545   ⟹   ENSHGLP00000015385
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247847,317,507 - 7,322,619 (+)Ensembl
RefSeq Acc Id: XM_004856583   ⟹   XP_004856640
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247847,317,646 - 7,324,128 (+)NCBI
RefSeq Acc Id: XM_013076568   ⟹   XP_012932022
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247847,317,920 - 7,324,128 (+)NCBI
RefSeq Acc Id: XM_013076569   ⟹   XP_012932023
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247847,317,642 - 7,324,128 (+)NCBI
RefSeq Acc Id: XM_013076570   ⟹   XP_012932024
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247847,317,912 - 7,324,128 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004856640 (Get FASTA)   NCBI Sequence Viewer  
  XP_012932022 (Get FASTA)   NCBI Sequence Viewer  
  XP_012932023 (Get FASTA)   NCBI Sequence Viewer  
  XP_012932024 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015385
GenBank Protein JAO02472 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012932023   ⟸   XM_013076569
- UniProtKB: A0A0P6JFQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856640   ⟸   XM_004856583
- UniProtKB: A0A0P6JFQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012932024   ⟸   XM_013076570
- UniProtKB: A0A0P6JFQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012932022   ⟸   XM_013076568
- UniProtKB: A0A0P6JFQ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000015385   ⟸   ENSHGLT00000015545


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010997 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015545 ENTREZGENE
InterPro TEX12 UniProtKB/TrEMBL
KEGG Report hgl:101703650 UniProtKB/TrEMBL
NCBI Gene Tex12 ENTREZGENE
PANTHER PTHR37349 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 12 UniProtKB/TrEMBL
Pfam TEX12 UniProtKB/TrEMBL
UniProt A0A0P6JFQ7 ENTREZGENE, UniProtKB/TrEMBL