Atp11b (ATPase phospholipid transporting 11B (putative)) - Rat Genome Database

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Gene: Atp11b (ATPase phospholipid transporting 11B (putative)) Heterocephalus glaber
Analyze
Symbol: Atp11b
Name: ATPase phospholipid transporting 11B (putative)
RGD ID: 18932890
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); ATPase-coupled intramembrane lipid transporter activity (inferred); INVOLVED IN phospholipid translocation (inferred); phospholipid transport (inferred); ASSOCIATED WITH Currarino syndrome (ortholog); genetic disease (ortholog); FOUND IN early endosome membrane (ortholog); phospholipid-translocating ATPase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable phospholipid-transporting ATPase IF
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473060,555,819 - 60,660,717 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473060,555,834 - 60,666,912 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp11b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473060,555,819 - 60,660,717 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473060,555,834 - 60,666,912 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP11B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383182,793,504 - 182,921,629 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3182,793,503 - 182,921,629 (+)EnsemblGRCh38hg38GRCh38
GRCh373182,511,292 - 182,639,417 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363183,993,985 - 184,122,117 (+)NCBINCBI36Build 36hg18NCBI36
Celera3180,945,823 - 181,073,871 (+)NCBICelera
Cytogenetic Map3q26.33NCBI
HuRef3179,916,059 - 180,044,192 (+)NCBIHuRef
CHM1_13182,474,199 - 182,602,334 (+)NCBICHM1_1
T2T-CHM13v2.03185,598,610 - 185,726,735 (+)NCBIT2T-CHM13v2.0
Atp11b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39335,808,104 - 35,910,425 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl335,808,255 - 35,910,425 (+)EnsemblGRCm39 Ensembl
GRCm38335,754,044 - 35,856,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl335,754,106 - 35,856,276 (+)EnsemblGRCm38mm10GRCm38
MGSCv37335,653,060 - 35,755,198 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36335,945,687 - 36,047,825 (+)NCBIMGSCv36mm8
Celera335,644,402 - 35,742,612 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.36NCBI
Atp11b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82120,513,535 - 120,619,249 (+)NCBIGRCr8
mRatBN7.22118,585,348 - 118,691,076 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2118,585,342 - 118,690,232 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02122,337,757 - 122,445,090 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2122,368,265 - 122,444,878 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02141,975,343 - 142,081,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42122,139,635 - 122,306,306 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2113,557,016 - 113,660,657 (+)NCBICelera
Cytogenetic Map2q25NCBI
Atp11b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542011,588,738 - 11,681,636 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542011,588,739 - 11,681,636 (+)NCBIChiLan1.0ChiLan1.0
ATP11B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22180,659,733 - 180,788,922 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13180,664,448 - 180,793,637 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03179,824,180 - 179,953,379 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13188,022,550 - 188,117,011 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3188,022,545 - 188,123,414 (+)Ensemblpanpan1.1panPan2
ATP11B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13415,802,376 - 15,916,896 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3415,829,063 - 15,914,842 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3419,892,109 - 20,007,628 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03415,710,979 - 15,826,496 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3415,710,934 - 15,825,156 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13415,751,710 - 15,867,212 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03415,732,931 - 15,847,688 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03415,975,821 - 16,090,792 (+)NCBIUU_Cfam_GSD_1.0
Atp11b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602112,528,880 - 112,645,276 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936566578,258 - 678,949 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936566577,975 - 691,849 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP11B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13120,727,608 - 120,873,930 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113120,727,633 - 120,873,907 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213130,080,764 - 130,147,223 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP11B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,494,309 - 6,624,385 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl156,510,578 - 6,624,315 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606315,296,974 - 15,430,864 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000020556   ⟹   ENSHGLP00000020354
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473060,555,819 - 60,660,717 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000020557   ⟹   ENSHGLP00000020355
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473060,555,819 - 60,659,727 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000020558   ⟹   ENSHGLP00000020356
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473060,555,819 - 60,659,722 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000020559   ⟹   ENSHGLP00000020357
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473060,561,322 - 60,659,727 (+)Ensembl
RefSeq Acc Id: XM_004834659   ⟹   XP_004834716
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,836 - 60,661,728 (+)NCBI
RefSeq Acc Id: XM_021254802   ⟹   XP_021110461
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,834 - 60,661,728 (+)NCBI
RefSeq Acc Id: XM_021254807   ⟹   XP_021110466
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,834 - 60,666,909 (+)NCBI
RefSeq Acc Id: XM_021254816   ⟹   XP_021110475
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,834 - 60,665,223 (+)NCBI
RefSeq Acc Id: XM_021254824   ⟹   XP_021110483
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,834 - 60,666,909 (+)NCBI
RefSeq Acc Id: XM_021254832   ⟹   XP_021110491
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,835 - 60,661,728 (+)NCBI
RefSeq Acc Id: XM_021254840   ⟹   XP_021110499
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,834 - 60,661,728 (+)NCBI
RefSeq Acc Id: XM_021254845   ⟹   XP_021110504
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,834 - 60,655,590 (+)NCBI
RefSeq Acc Id: XM_021254847   ⟹   XP_021110506
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,835 - 60,666,906 (+)NCBI
RefSeq Acc Id: XM_021254848   ⟹   XP_021110507
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,835 - 60,661,728 (+)NCBI
RefSeq Acc Id: XM_021254851   ⟹   XP_021110510
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,945 - 60,666,912 (+)NCBI
RefSeq Acc Id: XR_002393383
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473060,555,835 - 60,661,728 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021110483   ⟸   XM_021254824
- Peptide Label: isoform X3
- UniProtKB: G5ALA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110466   ⟸   XM_021254807
- Peptide Label: isoform X2
- UniProtKB: G5ALA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110475   ⟸   XM_021254816
- Peptide Label: isoform X1
- UniProtKB: G5ALA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110499   ⟸   XM_021254840
- Peptide Label: isoform X5
- UniProtKB: G5ALA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110461   ⟸   XM_021254802
- Peptide Label: isoform X1
- UniProtKB: G5ALA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110504   ⟸   XM_021254845
- Peptide Label: isoform X6
- UniProtKB: G5ALA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110506   ⟸   XM_021254847
- Peptide Label: isoform X7
- UniProtKB: G5ALA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110491   ⟸   XM_021254832
- Peptide Label: isoform X4
- UniProtKB: G5ALA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110507   ⟸   XM_021254848
- Peptide Label: isoform X9
- UniProtKB: G5ALA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004834716   ⟸   XM_004834659
- Peptide Label: isoform X8
- UniProtKB: G5ALA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110510   ⟸   XM_021254851
- Peptide Label: isoform X10
- UniProtKB: G5ALA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000020356   ⟸   ENSHGLT00000020558
RefSeq Acc Id: ENSHGLP00000020357   ⟸   ENSHGLT00000020559
RefSeq Acc Id: ENSHGLP00000020354   ⟸   ENSHGLT00000020556
RefSeq Acc Id: ENSHGLP00000020355   ⟸   ENSHGLT00000020557


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014553 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020556 ENTREZGENE
  ENSHGLT00000020557 ENTREZGENE
  ENSHGLT00000020558 ENTREZGENE
  ENSHGLT00000020559 ENTREZGENE
Gene3D-CATH Calcium-transporting ATPase, cytoplasmic domain N UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  HAD superfamily/HAD-like UniProtKB/TrEMBL
InterPro ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IV UniProtKB/TrEMBL
  P-type_ATPase_N UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene Atp11b ENTREZGENE
PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE IF UniProtKB/TrEMBL
  PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  Hydrolase UniProtKB/TrEMBL
  PhoLip_ATPase_C UniProtKB/TrEMBL
  PhoLip_ATPase_N UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
Superfamily-SCOP Calcium ATPase, transduction domain A UniProtKB/TrEMBL
  Calcium ATPase, transmembrane domain M UniProtKB/TrEMBL
  HAD-like UniProtKB/TrEMBL
  Metal cation-transporting ATPase, ATP-binding domain N UniProtKB/TrEMBL
UniProt G5ALA0 ENTREZGENE, UniProtKB/TrEMBL