Nckap5l (NCK associated protein 5 like) - Rat Genome Database

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Gene: Nckap5l (NCK associated protein 5 like) Heterocephalus glaber
Analyze
Symbol: Nckap5l
Name: NCK associated protein 5 like
RGD ID: 18932541
Description: INVOLVED IN microtubule bundle formation (inferred); microtubule depolymerization (inferred); FOUND IN centrosome (inferred); microtubule plus-end (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nck-associated protein 5-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248162,464,915 - 2,503,548 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248162,464,992 - 2,503,042 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nckap5l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248162,464,915 - 2,503,548 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248162,464,992 - 2,503,042 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NCKAP5L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381249,791,152 - 49,828,413 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1249,791,146 - 49,828,750 (-)EnsemblGRCh38hg38GRCh38
GRCh371250,184,935 - 50,222,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,471,202 - 48,508,475 (-)NCBINCBI36Build 36hg18NCBI36
Celera1248,980,950 - 49,018,227 (-)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1247,216,094 - 47,253,370 (-)NCBIHuRef
CHM1_11250,151,271 - 50,188,534 (-)NCBICHM1_1
T2T-CHM13v2.01249,754,152 - 49,791,427 (-)NCBIT2T-CHM13v2.0
Nckap5l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,319,915 - 99,355,676 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1599,319,916 - 99,355,629 (-)EnsemblGRCm39 Ensembl
GRCm381599,422,034 - 99,457,938 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,422,035 - 99,457,748 (-)EnsemblGRCm38mm10GRCm38
MGSCv371599,252,465 - 99,288,179 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361599,250,068 - 99,285,782 (-)NCBIMGSCv36mm8
Celera15101,577,208 - 101,613,081 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
Nckap5l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,433,569 - 132,470,638 (-)NCBIGRCr8
mRatBN7.27130,553,683 - 130,591,886 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7130,555,368 - 130,591,857 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7132,360,543 - 132,372,490 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07134,586,119 - 134,598,068 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07134,498,631 - 134,510,573 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07141,081,943 - 141,093,924 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7141,081,943 - 141,095,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X115,585,526 - 115,597,266 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,168,068 - 138,179,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7127,037,669 - 127,049,646 (-)NCBICelera
Cytogenetic Map7q36NCBI
Nckap5l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547379,440 - 417,284 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955547381,338 - 416,658 (-)NCBIChiLan1.0ChiLan1.0
NCKAP5L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21044,356,289 - 44,393,759 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11244,353,186 - 44,390,513 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01238,922,936 - 38,960,273 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11239,816,637 - 39,853,800 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,816,637 - 39,853,800 (+)Ensemblpanpan1.1panPan2
NCKAP5L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,873,200 - 4,902,307 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,873,291 - 4,902,307 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,354,605 - 41,384,521 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,922,585 - 4,952,633 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,922,608 - 4,952,637 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1274,888,087 - 4,918,095 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,877,602 - 4,907,623 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02741,749,353 - 41,779,367 (-)NCBIUU_Cfam_GSD_1.0
Nckap5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,660,366 - 65,694,406 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365127,470,057 - 7,504,808 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365127,470,425 - 7,504,421 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCKAP5L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,711,253 - 15,725,097 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,711,242 - 15,761,401 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2516,197,636 - 16,247,776 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCKAP5L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,028,803 - 46,067,081 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1146,027,202 - 46,067,067 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037200,055,780 - 200,094,288 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000010971   ⟹   ENSHGLP00000010849
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248162,464,915 - 2,503,548 (+)Ensembl
RefSeq Acc Id: XM_004863012   ⟹   XP_004863069
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248162,464,992 - 2,503,042 (+)NCBI
RefSeq Acc Id: XM_021243043   ⟹   XP_021098702
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248162,465,026 - 2,503,042 (+)NCBI
RefSeq Acc Id: XM_021243044   ⟹   XP_021098703
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248162,464,992 - 2,502,336 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004863069 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098702 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098703 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010849
GenBank Protein JAO02931 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004863069   ⟸   XM_004863012
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JYA6 (UniProtKB/TrEMBL),   G5AU12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098703   ⟸   XM_021243044
- Peptide Label: isoform X2
- UniProtKB: G5AU12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098702   ⟸   XM_021243043
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JYA6 (UniProtKB/TrEMBL),   G5AU12 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000010849   ⟸   ENSHGLT00000010971


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007784 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010971 ENTREZGENE
InterPro NCKAP5_C UniProtKB/TrEMBL
  Nckap5l UniProtKB/TrEMBL
KEGG Report hgl:101708503 UniProtKB/TrEMBL
NCBI Gene Nckap5l ENTREZGENE
PANTHER NCK-ASSOCIATED PROTEIN 5-LIKE UniProtKB/TrEMBL
  PTHR21740 UniProtKB/TrEMBL
Pfam NCKAP5 UniProtKB/TrEMBL
UniProt A0A0P6JYA6 ENTREZGENE, UniProtKB/TrEMBL
  G5AU12 ENTREZGENE, UniProtKB/TrEMBL