Gene: Prrt3 (proline rich transmembrane protein 3) Heterocephalus glaber |
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Analyze |
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Symbol: |
Prrt3 |
Name: |
proline rich transmembrane protein 3 |
RGD ID: |
18932306 |
Description: |
ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); Candidiasis, Familial, 9 (ortholog); Neurodevelopmental Disorders (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
proline-rich transmembrane protein 3 |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly |
Position: |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
Prrt3 (Heterocephalus glaber - naked mole-rat) |
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PRRT3 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 3 | 9,945,542 - 9,952,408 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 3 | 9,939,450 - 9,952,408 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 3 | 9,987,226 - 9,994,092 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 3 | 9,962,226 - 9,969,078 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 3 | 9,922,670 - 9,929,520 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | p25.3 | NCBI | | | | | HuRef | 3 | 9,923,557 - 9,930,407 (-) | NCBI | | HuRef | | | CHM1_1 | 3 | 9,937,378 - 9,944,230 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 3 | 9,937,528 - 9,946,480 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Prrt3 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 6 | 113,470,599 - 113,479,071 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 6 | 113,470,600 - 113,478,892 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 6 | 113,493,638 - 113,502,082 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 6 | 113,493,639 - 113,501,931 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 6 | 113,444,089 - 113,451,812 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 6 | 113,459,872 - 113,467,595 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 6 | 115,321,057 - 115,328,770 (-) | NCBI | | Celera | | | Cytogenetic Map | 6 | E3 | NCBI | | | | | cM Map | 6 | 52.77 | NCBI | | | | |
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Prrt3 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 4 | 148,196,800 - 148,206,086 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 4 | 146,641,173 - 146,650,487 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 4 | 146,641,173 - 146,650,317 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 4 | 152,025,121 - 152,034,257 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 4 | 147,805,962 - 147,815,098 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 4 | 146,428,228 - 146,437,360 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 4 | 145,449,574 - 145,458,900 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 4 | 145,450,861 - 145,454,834 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 4 | 208,746,873 - 208,756,151 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 4 | 149,387,967 - 149,393,829 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 4 | 135,197,089 - 135,206,233 (-) | NCBI | | Celera | | | Cytogenetic Map | 4 | q42 | NCBI | | | | |
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Prrt3 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955561 | 1,431,375 - 1,435,670 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955561 | 1,430,767 - 1,437,981 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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PRRT3 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 2 | 9,949,863 - 9,959,953 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 3 | 9,954,622 - 9,964,712 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 3 | 9,890,336 - 9,897,263 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 3 | 10,238,720 - 10,246,153 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 3 | 10,238,720 - 10,246,127 (-) | Ensembl | panpan1.1 | | panPan2 | |
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PRRT3 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 20 | 8,325,232 - 8,333,155 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 20 | 8,328,943 - 8,332,954 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 20 | 8,358,900 - 8,366,810 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 20 | 8,354,503 - 8,362,412 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 20 | 8,358,219 - 8,362,032 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 20 | 8,076,793 - 8,084,714 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 20 | 8,422,739 - 8,430,217 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 20 | 8,395,399 - 8,403,316 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Prrt3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404942 | 15,652,315 - 15,660,801 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936602 | 3,248,628 - 3,257,291 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936602 | 3,252,655 - 3,257,400 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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PRRT3 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 13 | 66,200,797 - 66,211,449 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 13 | 66,200,400 - 66,211,595 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 13 | 73,279,810 - 73,285,689 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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PRRT3 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 22 | 45,970,474 - 45,978,764 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 22 | 45,971,148 - 45,975,076 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666041 | 120,584,244 - 120,592,680 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Expression
Sequence
RefSeq Acc Id: |
ENSHGLT00000025968 ⟹ ENSHGLP00000025740 |
Type: |
CODING |
Position: |
Naked Mole-Rat Assembly | Chr | Position (strand) | Source |
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HetGla_female_1.0 Ensembl | NW_004624731 | 4,544,936 - 4,548,677 (-) | Ensembl |
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RefSeq Acc Id: |
XM_004835316 ⟹ XP_004835373 |
Type: |
CODING |
Position: |
Naked Mole-Rat Assembly | Chr | Position (strand) | Source |
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HetGla 1.0 | NW_004624731 | 4,544,664 - 4,551,127 (-) | NCBI |
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RefSeq Acc Id: |
XM_004835317 ⟹ XP_004835374 |
Type: |
CODING |
Position: |
Naked Mole-Rat Assembly | Chr | Position (strand) | Source |
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HetGla 1.0 | NW_004624731 | 4,544,664 - 4,552,890 (-) | NCBI |
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RefSeq Acc Id: |
XM_004835318 ⟹ XP_004835375 |
Type: |
CODING |
Position: |
Naked Mole-Rat Assembly | Chr | Position (strand) | Source |
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HetGla 1.0 | NW_004624731 | 4,544,664 - 4,551,227 (-) | NCBI |
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RefSeq Acc Id: |
XM_004835319 ⟹ XP_004835376 |
Type: |
CODING |
Position: |
Naked Mole-Rat Assembly | Chr | Position (strand) | Source |
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HetGla 1.0 | NW_004624731 | 4,544,664 - 4,550,949 (-) | NCBI |
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RefSeq Acc Id: |
XM_004835320 ⟹ XP_004835377 |
Type: |
CODING |
Position: |
Naked Mole-Rat Assembly | Chr | Position (strand) | Source |
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HetGla 1.0 | NW_004624731 | 4,544,664 - 4,551,127 (-) | NCBI |
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RefSeq Acc Id: |
XM_004835321 ⟹ XP_004835378 |
Type: |
CODING |
Position: |
Naked Mole-Rat Assembly | Chr | Position (strand) | Source |
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HetGla 1.0 | NW_004624731 | 4,544,664 - 4,551,128 (-) | NCBI |
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RefSeq Acc Id: |
XP_004835374 ⟸ XM_004835317 |
RefSeq Acc Id: |
XP_004835375 ⟸ XM_004835318 |
RefSeq Acc Id: |
XP_004835378 ⟸ XM_004835321 |
RefSeq Acc Id: |
XP_004835377 ⟸ XM_004835320 |
RefSeq Acc Id: |
XP_004835373 ⟸ XM_004835316 |
RefSeq Acc Id: |
XP_004835376 ⟸ XM_004835319 |
RefSeq Acc Id: |
ENSHGLP00000025740 ⟸ ENSHGLT00000025968 |
Additional Information
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